View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_low_15 (Length: 250)
Name: NF10117_low_15
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 13646202 - 13645968
Alignment:
| Q |
3 |
ctttcatcaatcgatcaatgactccaaaagtaagcctataaaagacgcccttcatcacaaatacaagatgcataatttctatttt-caatacctctcacc |
101 |
Q |
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| T |
13646202 |
ctttcatcaatcgatcaatgactccaaaagtaagcctataaatgacgccgttcatcacaaatacaagatgcataatttctatttttcaatacctctcacc |
13646103 |
T |
|
| Q |
102 |
cttgcgctcttacttacttaagcatcaaaatgttttcaggtacccccttcacttgcatctcaacggttgttgtttgacaaatgtcatcattttgattact |
201 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13646102 |
tttgcgctcttactta----agcatcaaaatgttttcaggcacccccttcactcgcatctcaacggttgttgtttgacaaatatcatcattttgattact |
13646007 |
T |
|
| Q |
202 |
ccatatcaata-ccttaactatctaacatctcatttcat |
239 |
Q |
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||||||||||| |||||||||| |||||||||||||||| |
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| T |
13646006 |
ccatatcaatatccttaactatttaacatctcatttcat |
13645968 |
T |
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