View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_low_18 (Length: 242)
Name: NF10117_low_18
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 13646551 - 13646329
Alignment:
| Q |
20 |
ccaatttcctaacgcaagccatccgataccatttggtgtttgtctctcgtcattccacacacgatcatttcaagccgcagaaatctgccataacagaaca |
119 |
Q |
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| T |
13646551 |
ccaatttccttacgcaagccacccgataccatttggtgtttgtctctcgtcattccacacacgatcatttcaagccgcagaaatctgccataacataaca |
13646452 |
T |
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| Q |
120 |
tcacgcacccagtcatatcaagagattcattcatgcaaacatcaaaggtaaaagctgaaatgttatcaaattcaggcctacaagacccaaataaacatta |
219 |
Q |
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| T |
13646451 |
tcatgcacccagccatatcaagagattcattcctgcaaacatcaaagataaaagctgaaatgttatcaaattcaggcctacaagacccaaataaacatta |
13646352 |
T |
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| Q |
220 |
tggcccaaactcatctactttac |
242 |
Q |
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| T |
13646351 |
tggcccaaactcatctactttac |
13646329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 8752212 - 8752344
Alignment:
| Q |
60 |
tgtctctcgtcattccacacacgatcatttcaagccgcagaaatctgccataacagaacatcac-gcacccagtcatatcaagagattcattcatgcaaa |
158 |
Q |
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| T |
8752212 |
tgtcgctcgtcattttacacacaatcatttcgagctgtccaaatctgccacaacagaacaacaatgtgcccaaccatatcacgagattcattcctgcaaa |
8752311 |
T |
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| Q |
159 |
catcaaaggtaaaagctgaaatgttatcaaatt |
191 |
Q |
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| T |
8752312 |
cattaaagataaaagctaaaatgttatcaaatt |
8752344 |
T |
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