View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10117_low_2 (Length: 545)

Name: NF10117_low_2
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10117_low_2
NF10117_low_2
[»] chr3 (18 HSPs)
chr3 (105-314)||(22323293-22323501)
chr3 (105-314)||(22338352-22338560)
chr3 (7-109)||(22319333-22319435)
chr3 (396-525)||(22323645-22323774)
chr3 (396-525)||(22338704-22338833)
chr3 (452-525)||(22324516-22324589)
chr3 (452-525)||(22325327-22325400)
chr3 (452-525)||(22326135-22326208)
chr3 (452-525)||(22326950-22327023)
chr3 (452-525)||(22327764-22327837)
chr3 (452-525)||(22328576-22328649)
chr3 (452-525)||(22329389-22329462)
chr3 (452-525)||(22330200-22330273)
chr3 (452-525)||(22331015-22331088)
chr3 (452-525)||(22331829-22331902)
chr3 (452-525)||(22332640-22332713)
chr3 (452-525)||(22333451-22333524)
chr3 (452-525)||(22334262-22334335)
[»] chr2 (1 HSPs)
chr2 (111-175)||(22806479-22806543)
[»] chr8 (1 HSPs)
chr8 (110-175)||(28813588-28813653)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 105 - 314
Target Start/End: Original strand, 22323293 - 22323501
Alignment:
Q  105 aataccataagatgttattcatgattgtcatgttccttgaagcctagaatgtgataatttcttgcaactttaaactcttggcattctttggaattaaatc 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  22323293 aataccataagattttattcatgattgtcatgttccttgaagcctagaatgtgataatttcttgcaactttaaacccttggcattctttggaattaa-tc 22323391  T
Q  205 atgctttattttggtccttttgaatctggctttgagtcttgaacttaagttttgctcggagtgcaaaaatttaagagtaaaggaatttgataagtgcatt 304  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  22323392 atggtttattttggtccttttgaatctggctttgagtcttgaacttatgttttgctcggagtgcaaaaatttaagcgtggaggaatttgataagtgcatt 22323491  T
Q  305 ttgtcgcatc 314  Q
    ||||| ||||    
T  22323492 ttgtcacatc 22323501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 105 - 314
Target Start/End: Original strand, 22338352 - 22338560
Alignment:
Q  105 aataccataagatgttattcatgattgtcatgttccttgaagcctagaatgtgataatttcttgcaactttaaactcttggcattctttggaattaaatc 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  22338352 aataccataagattttattcatgattgtcatgttccttgaagcctagaatgtgataatttcttgcaactttaaacccttggcattctttggaattaa-tc 22338450  T
Q  205 atgctttattttggtccttttgaatctggctttgagtcttgaacttaagttttgctcggagtgcaaaaatttaagagtaaaggaatttgataagtgcatt 304  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  22338451 atggtttattttggtccttttgaatctggctttgagtcttgaacttatgttttgctcggagtgcaaaaatttaagcgtggaggaatttgataagtgcatt 22338550  T
Q  305 ttgtcgcatc 314  Q
    ||||| ||||    
T  22338551 ttgtcacatc 22338560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 22319333 - 22319435
Alignment:
Q  7 tatctcatatttaccttggcttcgttacaacctcaataaannnnnnngatctttacgtgcatgagtttcaagtgtagatgctagagatttttcaagccaa 106  Q
    |||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22319333 tatctcatatttaccttggcctcgttacaacctcaataaaaacttttgatctttacgtgcatgagtttcaagtgtagatgctagagatttttcaagccaa 22319432  T
Q  107 tac 109  Q
    |||    
T  22319433 tac 22319435  T

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Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 396 - 525
Target Start/End: Original strand, 22323645 - 22323774
Alignment:
Q  396 ttgttaatctggtaggccataactttggatgcggttatcagattgaagtgtgaaaatatgtgttgtaaagctaaagaacacaacaataacttttatcttg 495  Q
    |||||||||  ||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||| ||||||||| |||    
T  22323645 ttgttaatcgtgtaggccataattttggacgcggttatcagattgaagtgtgcaaatatgcgttgtcaagctaaggaacacaacaacaacttttatgttg 22323744  T
Q  496 aacccgaagcccagttcatacgtcctactt 525  Q
    ||||||||| ||| || |||||||||||||    
T  22323745 aacccgaagtccaattaatacgtcctactt 22323774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 396 - 525
Target Start/End: Original strand, 22338704 - 22338833
Alignment:
Q  396 ttgttaatctggtaggccataactttggatgcggttatcagattgaagtgtgaaaatatgtgttgtaaagctaaagaacacaacaataacttttatcttg 495  Q
    |||||||||  ||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||| ||||||||| |||    
T  22338704 ttgttaatcgtgtaggccataattttggacgcggttatcagattgaagtgtgcaaatatgcgttgtcaagctaaggaacacaacaacaacttttatgttg 22338803  T
Q  496 aacccgaagcccagttcatacgtcctactt 525  Q
    ||||||||| ||| || |||||||||||||    
T  22338804 aacccgaagtccaattaatacgtcctactt 22338833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22324516 - 22324589
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22324516 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22324589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22325327 - 22325400
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22325327 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22325400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22326135 - 22326208
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22326135 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22326208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22326950 - 22327023
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22326950 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22327023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22327764 - 22327837
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22327764 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22327837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22328576 - 22328649
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22328576 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22328649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22329389 - 22329462
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22329389 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22329462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22330200 - 22330273
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22330200 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22330273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22331015 - 22331088
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22331015 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22331088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22331829 - 22331902
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22331829 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22332640 - 22332713
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22332640 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22332713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22333451 - 22333524
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22333451 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22333524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 22334262 - 22334335
Alignment:
Q  452 tatgtgttgtaaagctaaagaacacaacaataacttttatcttgaacccgaagcccagttcatacgtcctactt 525  Q
    |||| ||||| || |||| ||||||||||| ||||||||| |||||||||||| ||| || |||||||||||||    
T  22334262 tatgcgttgtcaaactaaggaacacaacaacaacttttatgttgaacccgaagtccaattaatacgtcctactt 22334335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 22806543 - 22806479
Alignment:
Q  111 ataagatgttattcatgattgtcatgttccttgaagcctagaatgtgataatttcttgcaacttt 175  Q
    ||||||||||||||||||||| |||| |||||||| ||| ||||||| |||||||||| ||||||    
T  22806543 ataagatgttattcatgattgccatgctccttgaatcctggaatgtgctaatttcttgtaacttt 22806479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 28813588 - 28813653
Alignment:
Q  110 cataagatgttattcatgattgtcatgttccttgaagcctagaatgtgataatttcttgcaacttt 175  Q
    |||||||||||||||||||||| |||  |||||||| | ||||||||| ||||| |||||| ||||    
T  28813588 cataagatgttattcatgattggcatactccttgaatcttagaatgtgctaattgcttgcagcttt 28813653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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