View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_low_4 (Length: 476)
Name: NF10117_low_4
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 128 - 462
Target Start/End: Complemental strand, 42938236 - 42937904
Alignment:
| Q |
128 |
attagaccaattcaaaaacagaacaaccccataacaatcatttcaaacaaatcacacactacccattagcatctaccacaaaaataaccaatacccattt |
227 |
Q |
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| T |
42938236 |
attagaccaattcaaaaacagaacaaccccataacaatcatttcaaacaaatcacacactacccattagcatctaccacaaaaataaccaatacccattt |
42938137 |
T |
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| Q |
228 |
caccaaacccactttcacaacaaattaaccatgtataagcacaccccataatnnnnnnnnttcaattttttcccttgttattgtacctggataccaaggc |
327 |
Q |
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| T |
42938136 |
caccaaacccactttcacaacaaattaaccatgtataagcacaccccataataaaaaaa-ttcaattttt-cccttgttattgtacctggataccaaggc |
42938039 |
T |
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| Q |
328 |
tcgggccaggaaggagtggaaaacgaagtagcttgagggtcttcaagatttcgaagccagacaaggtcatcaactttcttagcaatttgaggaatgcgga |
427 |
Q |
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| T |
42938038 |
tcaggccaggaaggagtggaaaacgaagtagcttgagggtcttcaagatttcgaagccagacaaggtcatcaactttcttagcaatttgaggaatgcgga |
42937939 |
T |
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| Q |
428 |
aagcatcatttgcccacgcaacaccattgttaaat |
462 |
Q |
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| T |
42937938 |
aagcatcatttgcccacgcaacaccattgttaaat |
42937904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 42938356 - 42938266
Alignment:
| Q |
10 |
atgaaccaatcaacaaactaaacagacccgctaacactctaaagattgaagctacatgttaagtacagcaatatccaatacccaactcaca |
100 |
Q |
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| T |
42938356 |
atgaaccaatcaaccaactaaacagacccgctaacactctaaagattgaagctacatgttaagtacagcaatatccaatacccaactcaca |
42938266 |
T |
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