View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_high_2 (Length: 472)
Name: NF10118_high_2
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_high_2 |
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| [»] scaffold0160 (2 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 19744 - 19419
Alignment:
| Q |
1 |
tagagcaagtcacaagaagattaaaccaaacataacggtggaagaatcgtcaccagaattcgaaattgttgaaaagaaagttcatgaatgtccggtatgt |
100 |
Q |
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| T |
19744 |
tagagcaagtcacaagaagattaaaccgaacataacggtggaagaatcgtcaccagaattcgaaattgttgaaaagaaagttcatgaatgtccggtatgt |
19645 |
T |
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| Q |
101 |
tttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacatgtgattcatggatcatcatcaacaacagttccaattttcagctcaaaaa |
200 |
Q |
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| T |
19644 |
tttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacatgtgattcatggatcatcatcaacaacagttccaattttcagctcaaaaa |
19545 |
T |
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| Q |
201 |
gagttacaaaaagtgttatagatcttaaccttcctgctccaattgatgatgatgaagttagtcaaattgaaaattctgctgtttctgatgcagaatttct |
300 |
Q |
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| T |
19544 |
gagttacaaaaagtgttatagatcttaaccttcctgctccaattgatgatgatgaagttagtcaaattgaaaattctgctgtttctgatgcagaatttct |
19445 |
T |
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| Q |
301 |
caaaactcgttaagcatcatggatgg |
326 |
Q |
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| T |
19444 |
caaaactcgttaagcatcatggatgg |
19419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 19350 - 19271
Alignment:
| Q |
377 |
aataatgttctacaaattttgttatacttatatagttactctatatattattgtaataataattcttcaatgattttatt |
456 |
Q |
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| T |
19350 |
aataatgttctacaaattttgttatacttatatagttactctatatattattgtaataataattcttcaatgattttatt |
19271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 9546059 - 9545978
Alignment:
| Q |
70 |
tgaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacat |
151 |
Q |
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| T |
9546059 |
tgaaaagaaaattcatgaatgtccaatttgttttagagaatttgcttcaggtcaagcactaggtggacataggagaacacat |
9545978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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