View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_high_5 (Length: 351)

Name: NF10118_high_5
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_high_5
NF10118_high_5
[»] chr5 (8 HSPs)
chr5 (54-145)||(15060009-15060100)
chr5 (54-145)||(15058271-15058362)
chr5 (238-329)||(15058453-15058544)
chr5 (238-329)||(15061917-15062007)
chr5 (1-50)||(15058174-15058223)
chr5 (1-50)||(15059909-15059958)
chr5 (238-329)||(37508398-37508492)
chr5 (238-329)||(2020961-2021053)
[»] chr1 (6 HSPs)
chr1 (238-329)||(13255324-13255417)
chr1 (238-328)||(47905697-47905789)
chr1 (283-328)||(50476519-50476565)
chr1 (238-329)||(1688225-1688317)
chr1 (323-351)||(6742849-6742877)
chr1 (263-329)||(7963954-7964022)
[»] scaffold0028 (1 HSPs)
scaffold0028 (238-329)||(35463-35555)
[»] chr7 (3 HSPs)
chr7 (238-329)||(42620360-42620452)
chr7 (240-329)||(33406642-33406733)
chr7 (238-329)||(43778584-43778677)
[»] chr2 (3 HSPs)
chr2 (238-329)||(13765947-13766039)
chr2 (238-329)||(4041944-4042037)
chr2 (238-329)||(38293869-38293961)
[»] chr8 (2 HSPs)
chr8 (283-329)||(6839837-6839883)
chr8 (238-327)||(43733128-43733219)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 15060009 - 15060100
Alignment:
Q  54 ccctaaaattttgactaataatagatgatattcttatgctttgtttgggaatttggaggtgagaaatatcaaaaatagaaaaaactttcaca 145  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15060009 ccctaaaattttgactaataatcgatgatattcttatgctttgtttgggaatttggaggtgagaaatatcaaaaatagaaaaaactttcaca 15060100  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 15058271 - 15058362
Alignment:
Q  54 ccctaaaattttgactaataatagatgatattcttatgctttgtttgggaatttggaggtgagaaatatcaaaaatagaaaaaactttcaca 145  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15058271 ccctaaaattttgactaatgatcgatgatattcttatgctttttttggaaatttggaggtgagaaatatcaaaaatagaaaaaactttcaca 15058362  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 15058453 - 15058544
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaattttgagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15058453 tcatataaactctctaaaattcctaaaaaccttctcccaatacaattttgagttcctcaaatgagggtaattttgtactatgaataaaaaat 15058544  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 15061917 - 15062007
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaattttgagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  15061917 tcatataaaccatctaaaactcctaaaaatcttctcccaatacaattttgagtt-ctcaaataaggggaattttgtactatgaataaaaaat 15062007  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15058174 - 15058223
Alignment:
Q  1 tttaaaccctaatgttttgggctccctgcgccggatcaaatttattattt 50  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15058174 tttaaaccctaatgttttgggctccctgcgctggatcaaatttattattt 15058223  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15059909 - 15059958
Alignment:
Q  1 tttaaaccctaatgttttgggctccctgcgccggatcaaatttattattt 50  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15059909 tttaaaccctaatgttttgggctccctgcgctggatcaaatttattattt 15059958  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 37508398 - 37508492
Alignment:
Q  238 tcatataaaccctctaaaactcct-aaaaaccttctcccactacaatttt-gagttcctc-aaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||  ||||||| || |||| ||||||||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  37508398 tcatataaaccctccataaccccccaaaaaccctcccccaatacaatttttgagttcctccaaatgaggggaattttttattatgaataaaaaat 37508492  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 2021053 - 2020961
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||| |||||| || |||| ||||||||| ||||||||| || |||||| ||||| || ||||| ||||||||    
T  2021053 tcatataaaccctccataacccctcaaaaccctcccccaatacaatttttgagttcctccaaagagggggattttttattatgagtaaaaaat 2020961  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 13255417 - 13255324
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaa-ttttgagtt-cctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||||| ||| ||  |||||| ||||||||||||| ||||||||| || ||||||||||| ||||| || ||||| ||||||||    
T  13255417 tcatataaaccctctataaccccccaaaaccctctcccactacaatttttgagttcccccaaatgagggggattttttattatgagtaaaaaat 13255324  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 47905697 - 47905789
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctc-aaatgaggggaattttgtactatgaataaaaaa 328  Q
    |||||||||||||| | ||| || ||||||| || |||| ||||||||| ||||||| | |||||||||||||||| || ||||| |||||||    
T  47905697 tcatataaaccctccataacccccaaaaaccctcccccaatacaatttttgagttcccccaaatgaggggaattttttattatgagtaaaaaa 47905789  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 50476565 - 50476519
Alignment:
Q  283 ttttgagttcc-tcaaatgaggggaattttgtactatgaataaaaaa 328  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||    
T  50476565 ttttgagttccctcaaatgagggggattttgtattatgaataaaaaa 50476519  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 1688225 - 1688317
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||  |||||  || |||| ||||||||| ||||||| ||||||||||| ||||| || ||||| ||||||||    
T  1688225 tcatataaaccctccataaccccccaaaactctcccccaatacaatttttgagttccccaaatgagggggattttttattatgagtaaaaaat 1688317  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 6742849 - 6742877
Alignment:
Q  323 aaaaaatggcttaattgcacttttggacc 351  Q
    |||||||||||||||||||||||||||||    
T  6742849 aaaaaatggcttaattgcacttttggacc 6742877  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 7964022 - 7963954
Alignment:
Q  263 aaaaccttctcccactacaatttt-gagttcctc-aaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||| || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||    
T  7964022 aaaaccctcccccaatacaatttttgagttcctccaaatgagggggattttttactatgagtaaaaaat 7963954  T

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Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 35463 - 35555
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||  |||||| || |||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||    
T  35463 tcatataaaccctccataaccccccaaaaccctcccccaatacaatttttgagttccccaaatgaggggaattttttattatgagtaaaaaat 35555  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 42620360 - 42620452
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||| |||| | || |||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||    
T  42620360 tcatataaaccctccataacccctcaaaatcctcccccaatacaatttttgagttccccaaatgaggggaattttttattatgagtaaaaaat 42620452  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 33406642 - 33406733
Alignment:
Q  240 atataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcc-tcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||| | ||| ||  |||||| ||||||| ||||||||| ||||||| |||||||||||| ||||| || ||||| ||||||||    
T  33406642 atataaaccctccataaccccccaaaaccctctcccaatacaatttttgagttccctcaaatgagggggattttttattatgagtaaaaaat 33406733  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 43778584 - 43778677
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaattttg-agttcct-caaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||  |||||| || |||| |||||||||  ||||||| ||||||||||||||||| || ||||| ||||||||    
T  43778584 tcatataaaccctccataaccccccaaaaccctcccccaatacaattttttagttccttcaaatgaggggaattttttattatgagtaaaaaat 43778677  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 13765947 - 13766039
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||  |||||| || |||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||    
T  13765947 tcatataaaccctccacaaccccccaaaaccctcccccaatacaatttttgagttccccaaatgaggggaattttttattatgagtaaaaaat 13766039  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 4042037 - 4041944
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcct-caaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | ||| ||  |||||| || |||| ||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||||    
T  4042037 tcatataaaccctccataaccccccaaaaccctcccccaatacaatttttgagttccttcaaatgagggggattttttattatgagtaaaaaat 4041944  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 38293961 - 38293869
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaatttt-gagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    |||||||||||||| | |||  | ||||||| || |||| ||||||||| ||||||| ||||||||||  ||||| || ||||| ||||||||    
T  38293961 tcatataaaccctccataacctccaaaaaccctcccccaatacaatttttgagttccccaaatgagggagattttttattatgagtaaaaaat 38293869  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 6839837 - 6839883
Alignment:
Q  283 ttttgagttcctcaaatgaggggaattttgtactatgaataaaaaat 329  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||    
T  6839837 ttttgtgtccctcaaatgaggggaattttatattatgaataaaaaat 6839883  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 43733128 - 43733219
Alignment:
Q  238 tcatataaaccctctaaaactcctaaaaaccttctcccactacaattttg--agttcctcaaatgaggggaattttgtactatgaataaaaa 327  Q
    ||||||||| |||| |||||||| ||||||| ||  ||| |||||||||   | | |||||||||||| | |||||||| ||||||||||||    
T  43733128 tcatataaatcctccaaaactcccaaaaaccctcctccaatacaattttttaattccctcaaatgaggaggattttgtattatgaataaaaa 43733219  T

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