View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_high_6 (Length: 319)
Name: NF10118_high_6
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 7200048 - 7200340
Alignment:
| Q |
16 |
aattcaacacataataacaccattgcatgcagtccatcttaatcaaacaacacctgaccacaggagaacacaacacaaggtatcattgccaaccactaca |
115 |
Q |
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| T |
7200048 |
aattcaacacataataacaccattgcatgcagtccatcttaatcaaacaacacctgaccacaggagaacacaacacaaggtatcattgccaaccactaca |
7200147 |
T |
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| Q |
116 |
attttgttcttatgtttgaaacgcatggtatcaattccattttttagtttgcagttaaactgtttgatgaaatgtctgaaagagattttcatgtgaaaaa |
215 |
Q |
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| T |
7200148 |
attttgttcttatgtttgaaacgcatggtatcaattccattttttagttcgcagttaaactgtttgatgaaatatctgaaagagattttcatgtgaaaaa |
7200247 |
T |
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| Q |
216 |
atagatggagttgactttaactgaagaagatgcagctcattgggtttatagaggtgaaggtgctgctaatcttgttctctcttacacaggttc |
308 |
Q |
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| T |
7200248 |
atagatggagttgactttaactgaagaagatgcagctcattgggtttatagaggtgaaggtgctgctaatcttgttctctcttacactggttc |
7200340 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 52479560 - 52479607
Alignment:
| Q |
254 |
attgggtttatagaggtgaaggtgctgctaatcttgttctctcttaca |
301 |
Q |
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| T |
52479560 |
attgggtttacagaggcgaaggagctgctaatcttgttctcgcttaca |
52479607 |
T |
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