View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_high_9 (Length: 251)

Name: NF10118_high_9
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_high_9
NF10118_high_9
[»] chr7 (5 HSPs)
chr7 (11-247)||(41340442-41340677)
chr7 (16-65)||(13440956-13441005)
chr7 (11-65)||(43572434-43572488)
chr7 (16-65)||(36227344-36227393)
chr7 (11-62)||(18768301-18768352)
[»] chr8 (6 HSPs)
chr8 (16-67)||(6901836-6901887)
chr8 (19-65)||(43612378-43612424)
chr8 (11-56)||(43249006-43249051)
chr8 (21-65)||(12135124-12135168)
chr8 (19-65)||(43611384-43611430)
chr8 (16-65)||(23942985-23943034)
[»] chr6 (3 HSPs)
chr6 (11-65)||(15674725-15674779)
chr6 (11-65)||(11469460-11469514)
chr6 (19-65)||(26206234-26206280)
[»] chr4 (5 HSPs)
chr4 (11-65)||(23872670-23872724)
chr4 (11-65)||(55299514-55299568)
chr4 (11-64)||(23279696-23279749)
chr4 (29-65)||(26694839-26694875)
chr4 (11-65)||(20675928-20675982)
[»] chr3 (6 HSPs)
chr3 (11-65)||(24925878-24925932)
chr3 (29-65)||(36709820-36709856)
chr3 (11-65)||(6175670-6175724)
chr3 (11-65)||(10868537-10868591)
chr3 (19-56)||(21739690-21739727)
chr3 (29-65)||(42674631-42674667)
[»] chr1 (3 HSPs)
chr1 (11-65)||(48072619-48072673)
chr1 (19-65)||(5497987-5498033)
chr1 (11-65)||(32352505-32352559)
[»] chr2 (6 HSPs)
chr2 (16-65)||(11233682-11233731)
chr2 (16-65)||(9668199-9668248)
chr2 (11-62)||(28399746-28399797)
chr2 (19-65)||(13551483-13551529)
chr2 (16-65)||(8065454-8065503)
chr2 (16-65)||(35488736-35488785)
[»] chr5 (4 HSPs)
chr5 (11-65)||(30509216-30509270)
chr5 (11-65)||(30549559-30549613)
chr5 (16-62)||(38358366-38358412)
chr5 (29-65)||(22094442-22094478)
[»] scaffold0112 (1 HSPs)
scaffold0112 (16-65)||(14854-14903)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 41340442 - 41340677
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcaccaatatctgttgaatcttaaaacttgttcctctaaaaggaaattt 110  Q
    ||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41340442 caaaggagagaaatcggctatttcaacccgacaatctagatttaatgcgattcaccaatatctgttgaatcttaaaacttgttcctctaaaaggaaattt 41340541  T
Q  111 gataagccgggttgattagtgcatgtttagaatcacgataaatttaacnnnnnnnnagagaatgataagtttaaaatttaattttgttcaaataagattt 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  41340542 gataagccgggttgattggtgcatgtttagaatcacgataaatttaa-ttttttttagagaatgataagtttaaaatttaattttgttcaaataagattt 41340640  T
Q  211 tgtcaagatcatttatcacaatttatgttaaactcac 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  41340641 tgtcaagatcatttatcacaatttatgttaaactcac 41340677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 13440956 - 13441005
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  13440956 gagagaaaccgactattccaacccgacagtctagatttaatacgattcac 13441005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 43572434 - 43572488
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  43572434 caaacgagagaaaccggctattccaccccgacaatctagatttaatacgattcac 43572488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 36227393 - 36227344
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||||  | |||||||||||||||||||||| ||||||||||||||    
T  36227393 gagagaaacttgctattccaacccgacagtctagacttaatgcgattcac 36227344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 18768301 - 18768352
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgatt 62  Q
    |||| ||||||||||   || |||||||||||||||||||||||||||||||    
T  18768301 caaaagagagaaacctactaatccaacccgacagtctagatttaatgcgatt 18768352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 6901836 - 6901887
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcacca 67  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  6901836 gagagaaaccggctattccaacccgacaatctagatttaatacgattcacca 6901887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 43612424 - 43612378
Alignment:
Q  19 agaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||    
T  43612424 agaaacctgctattccaacccgacaatctagatttaatgcgattcac 43612378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 43249051 - 43249006
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaat 56  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||    
T  43249051 caaacgagagaaaccggttattccaacctgacaatctagatttaat 43249006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 12135124 - 12135168
Alignment:
Q  21 aaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||    
T  12135124 aaaccggttattccaacctgacaatctagatttaatacgattcac 12135168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 43611430 - 43611384
Alignment:
Q  19 agaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  43611430 agaaacctgctattccaacccgatagtctagatttaatgtgattcac 43611384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 23942985 - 23943034
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||| | | ||||||||||||||| |||||||||||| ||||||||    
T  23942985 gagagaaatctgctattccaacccgacaatctagatttaattcgattcac 23943034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 15674725 - 15674779
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  15674725 caaaagagagaaaccgtctattccaacccgacagtctagatttaatacgattcac 15674779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 11469460 - 11469514
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| ||||||||| || ||||||| |||||||||||||||||||| ||||||||    
T  11469460 caaatgagagaaacaggctattccaccccgacagtctagatttaattcgattcac 11469514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 26206234 - 26206280
Alignment:
Q  19 agaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||    
T  26206234 agaaaccgactattccaacccgacagtctagatttaatacgattcac 26206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 23872724 - 23872670
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  23872724 caaaagagagaaaccgactattccaacccgacagtctagatttaatacgattcac 23872670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 55299514 - 55299568
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||  ||||||||||||||| |||||||||||| ||||||||    
T  55299514 caaaagagagaaaccgactattccaacccgacaatctagatttaatacgattcac 55299568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 23279696 - 23279749
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattca 64  Q
    ||||||||||||||||||||||||||| ||  ||||||| |||||| |||||||    
T  23279696 caaaggagagaaaccggttattccaactcgtaagtctagttttaattcgattca 23279749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 26694839 - 26694875
Alignment:
Q  29 tattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26694839 tattccaacccgtcagtctagatttaatgcgattcac 26694875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 20675928 - 20675982
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||| ||||||  |||| ||||||||||||||||||||||| ||||||||    
T  20675928 caaaagagaaaaaccgactattacaacccgacagtctagatttaatacgattcac 20675982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 24925932 - 24925878
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| ||||||||||| |||||||||||||||||||||||||| || ||||||||    
T  24925932 caaaagagagaaaccgtttattccaacccgacagtctagattttatacgattcac 24925878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 36709820 - 36709856
Alignment:
Q  29 tattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  36709820 tattccaacccgacagtctagatttaatgcgattcac 36709856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 6175724 - 6175670
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||  |||||||    
T  6175724 caaaagagagaaaccgactattccaacccgacagtctagatttaatatgattcac 6175670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 10868537 - 10868591
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||| | ||||||    
T  10868537 caaacgagagaaaccggctattccaacccgacattctagatttaattctattcac 10868591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 21739727 - 21739690
Alignment:
Q  19 agaaaccggttattccaacccgacagtctagatttaat 56  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  21739727 agaaaccggctattccaacctgacagtctagatttaat 21739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 42674667 - 42674631
Alignment:
Q  29 tattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||| || ||||||||||||||||||||||||    
T  42674667 tattccaactcgtcagtctagatttaatgcgattcac 42674631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 48072673 - 48072619
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  48072673 caaaagagagaaaccgactattccaacccgacagtctagatttaatacgattcac 48072619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5497987 - 5498033
Alignment:
Q  19 agaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||    
T  5497987 agaaaccgactattccaacccgacagtctagatttaatacgattcac 5498033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 32352559 - 32352505
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||  |||||||||||||||||||||||||||| | ||||||    
T  32352559 caaaagagagaaaccgactattccaacccgacagtctagatttaatacaattcac 32352505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 11233731 - 11233682
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||||||||||||||||| ||||||||||||||||| | ||||||    
T  11233731 gagagaaaccggttattccaacctgacagtctagatttaattctattcac 11233682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 9668248 - 9668199
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||||||||||||||||| |||| |||||||||||| | ||||||    
T  9668248 gagagaaaccggttattccaacctgacaatctagatttaattctattcac 9668199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 28399797 - 28399746
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgatt 62  Q
    |||| ||||||||||   ||| ||||||||||||||||||||||||||||||    
T  28399797 caaaagagagaaacctactatgccaacccgacagtctagatttaatgcgatt 28399746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 13551483 - 13551529
Alignment:
Q  19 agaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||  |||||||||| ||||||||||||||||| ||||||||    
T  13551483 agaaaccgactattccaacctgacagtctagatttaatacgattcac 13551529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 8065503 - 8065454
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||| | | ||||||||||||||| |||||||||||| ||||||||    
T  8065503 gagagaaatctgctattccaacccgacaatctagatttaatacgattcac 8065454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 35488736 - 35488785
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||| | ||||||||| ||||||| |||||||||||| ||||||||    
T  35488736 gagagaaatctgttattccatcccgacaatctagatttaatacgattcac 35488785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 30509270 - 30509216
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  30509270 caaaagagagaaaccggctattccaccccgacaatctagatttaatacgattcac 30509216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 30549613 - 30549559
Alignment:
Q  11 caaaggagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  30549613 caaaagagagaaaccggctattccaccccgacaatctagatttaatacgattcac 30549559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 38358366 - 38358412
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgatt 62  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||    
T  38358366 gagagaaacctactattccaacccgacagtctagatttaatgcgatt 38358412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 22094478 - 22094442
Alignment:
Q  29 tattccaacccgacagtctagatttaatgcgattcac 65  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  22094478 tattccaacccgacagtctagctttaatacgattcac 22094442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 14903 - 14854
Alignment:
Q  16 gagagaaaccggttattccaacccgacagtctagatttaatgcgattcac 65  Q
    |||||||||| | ||||||||||||||| | ||||||||||| |||||||    
T  14903 gagagaaacctgctattccaacccgacaatatagatttaatgtgattcac 14854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University