View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10118_low_1 (Length: 929)
Name: NF10118_low_1
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 782; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 8 - 813
Target Start/End: Complemental strand, 6985754 - 6984949
Alignment:
| Q |
8 |
tagcataggcgcgcgcataatgtatatacatacacaacatatacgcattacaaacctgtatccagctttgaatagattgtaagacagaactcctaaaatc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985754 |
tagcataggcgcgcgcataatgtatatacatacacaacatatacgcattacaaacctgtatccagctttgaatagattgtaagacagaactcctaaaatc |
6985655 |
T |
|
| Q |
108 |
atctccggctacatcatatacttttgcctgaaattcagacaaatgagtcgatgacccaccacccaaagattatgctcaaacagatacagttgataagtgc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985654 |
atctccggctacatcatatacttttgcctgaaattcagacaaatgagtcaatgacccaccacccaaagattatgctcaaacagatacagttgataagtgc |
6985555 |
T |
|
| Q |
208 |
aacataaaggtgaaacaaaaaatggtaagagactgaggaaaaccggaagatccagattttgaatttcataatgctcacctttagtattaagaatatagca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6985554 |
aacataaaggtgaaacaaaaaatggtaagagaccgaggaaaaccggaagatccagattttgaatttcataatgctcacctttagtagtaagaatatagca |
6985455 |
T |
|
| Q |
308 |
gaagcataagcatcttccgccatagaagtaaatccgagacttttgagatcaagaacaacttttccaatgttcttcaccattttactgttttctgagaacc |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985454 |
gaagcataagcatcttccgccatagaagtaaatccgagacttttgagatcaagaacaacttttccaatgttcttcaccattttactgttttctgagaacc |
6985355 |
T |
|
| Q |
408 |
gacggtcgctgtagcactcatcaacatccatgtcaccatccttgttgcatatttttcctttttcatctaaatccatgccatccttattttgagatacatc |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985354 |
gacggtcgctgtagcactcatcaacatccatgtcaccatccttgttgcatatttttcctttttcatctaaatccatgccatccttattttgagatacatc |
6985255 |
T |
|
| Q |
508 |
atcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaaatata |
607 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6985254 |
atcagcgaactcaccatccatgggtgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaaatata |
6985155 |
T |
|
| Q |
608 |
aggccaaatagaaaaaatgaagtgttaagcatgtaaaaatatcaaagaagtggattagtattgacagtgttgaaaatatagttagttagagttactggtt |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985154 |
aggccaaatagaaaaaatgaagtgttaagcatgtaaaaatatcaaagaagtggattagtattgacagtgttgaaaatatagttagttagagttactggtt |
6985055 |
T |
|
| Q |
708 |
ggttagtatataagctaagttaagcatataagtcacagcgttacctcattggtgccatcttttcattttgtatctcatttctactactatcaatacaaca |
807 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6985054 |
ggttagtatataagctaacttaagtatataagtcacagcgttacctcattggtgccatcttttcattttgtatctcatttctactactatcaatacaaca |
6984955 |
T |
|
| Q |
808 |
agcttt |
813 |
Q |
| |
|
|||||| |
|
|
| T |
6984954 |
agcttt |
6984949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 844 - 914
Target Start/End: Complemental strand, 6984702 - 6984632
Alignment:
| Q |
844 |
cttgttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttg |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6984702 |
cttgttacaaaccagggaaaacccgaggaagtgtagtcataagcacggaagagacaatccattgatacttg |
6984632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 26 - 623
Target Start/End: Original strand, 31963668 - 31964262
Alignment:
| Q |
26 |
aatgtatatacatacacaacatatacgcattacaaacctgtatccagctttgaatagattgtaagacagaactcctaaaatcatctccggctacatcata |
125 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
31963668 |
aatgtatgcacatacacaacatatatgcactacaaacctgtatccagctttgaatagattgtaagaccgaactcctaaaatcatctcccgctacatcata |
31963767 |
T |
|
| Q |
126 |
tacttttgcctgaaattcagacaaatgagtcgatgacccaccacccaaagattatgctcaaacagatacagttgataagtgcaacataaaggtgaaacaa |
225 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||| ||||||||| ||||||||| || |||| ||||||||||||||| |||| || |
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| T |
31963768 |
tacttttgcctgcaagtcagacaaatgagtcaatgacccacc---caaagattagaatcaaacagagacgcgtgatgagtgcaacataaaggcgaaagaa |
31963864 |
T |
|
| Q |
226 |
aaaatggtaagagactgaggaaaaccggaagatccagattttgaatttcataa---tgctcacctttagtattaagaatatagcagaagcataagcatct |
322 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||| |
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|
| T |
31963865 |
gaaattgcaagagactgaggaaaaccggaagatccagattttgaatttcataagcatgctcacctttagtagtaaaaatatagcagaagcatacgcatct |
31963964 |
T |
|
| Q |
323 |
tccgccatagaagtaaatccgagacttttgagatcaagaacaacttttccaatgttcttcaccattttactgttttctgagaaccgacggtcgctgtagc |
422 |
Q |
| |
|
|| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |||| |
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| T |
31963965 |
tcagccattgaagtaaatccaagacttctgagatcaagaacaacttttccaatgttcttcaccagtttactgttttctgagaatcgacggtcactatagc |
31964064 |
T |
|
| Q |
423 |
actcatcaacatccatgtcaccatccttgttgcatatttttcctttttcatctaaatccatgccatccttattttgagatacatcatcagcgaactcacc |
522 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| || |
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|
| T |
31964065 |
actcatcaacatccatctcaccatc---tttgcatatttttcctttttcatctaaatccatgtcatccttattttgagacacatcatcagtgaactcccc |
31964161 |
T |
|
| Q |
523 |
atccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaaatataaggccaaatagaaaa |
622 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| |||||||||| || ||| | ||||||| |
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|
| T |
31964162 |
atccatgactgtacttaactcctccagccttcttttaaaataccaatgcaatatagctaatggtagcaaatgaaaaagaaatacaaagccgattagaaaa |
31964261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 35 - 605
Target Start/End: Original strand, 31899882 - 31900449
Alignment:
| Q |
35 |
acatacacaacatatacgcattacaaacctgtatccagctttgaatagattgtaagacagaactcctaaaatcatctccggctacatcatatacttttgc |
134 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31899882 |
acatacacaatatatatgcactacaaacctgtatccagctttgaatagattgcaagacagaactcctaaagtcatctcccgctacatcatatacttttgc |
31899981 |
T |
|
| Q |
135 |
ctgaaattcagacaaatgagtcgatgacccaccacccaaagattatgctcaaacagatacagttgataagtgcaacataaaggtgaaacaaaaaatggta |
234 |
Q |
| |
|
||| || ||| ||||||||||| |||||||||| |||||||||| ||||||||| || |||| |||||||||||||||||||| || |||| | | |
|
|
| T |
31899982 |
ctgcaagtcatacaaatgagtcaatgacccacc---caaagattataatcaaacagagacgcgtgatgagtgcaacataaaggtgaaagaagaaattgca |
31900078 |
T |
|
| Q |
235 |
agagactgaggaaaaccggaagatccagattttgaatttcataa---tgctcacctttagtattaagaatatagcagaagcataagcatcttccgccata |
331 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
31900079 |
agagactgagggaaactggaagatccagattttgaatttcataaacatgctcacctttagtagtaaaaatatagcagaagcatatgcatcttcagccatt |
31900178 |
T |
|
| Q |
332 |
gaagtaaatccgagacttttgagatcaagaacaacttttccaatgttcttcaccattttactgttttctgagaaccgacggtcgctgtagcactcatcaa |
431 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
31900179 |
gaagtaaatccaagacttctgagatcaagaacaacttttccaatgttcttcaccagtttactgttttctgagaatcgatggtcgctatagcactcatcaa |
31900278 |
T |
|
| Q |
432 |
catccatgtcaccatccttgttgcatatttttcctttttcatctaaatccatgccatccttattttgagatacatcatcagcgaactcaccatccatggc |
531 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
31900279 |
catccatctcaccatcc---ttgcatatttttcctttttcatctaaatccatgtcatccttattttgagatacatcatcagtgaactccccatccatgac |
31900375 |
T |
|
| Q |
532 |
tgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaaata |
605 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| ||| |||||| |
|
|
| T |
31900376 |
tgtacttaactcctccagccttcttttaaaataccagtgcaatatagctaatggtagcaaatgaaaaggaaata |
31900449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 848 - 913
Target Start/End: Original strand, 31900745 - 31900810
Alignment:
| Q |
848 |
ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatactt |
913 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
31900745 |
ttacaaaccagggaaaacgcgaggaagtgtagccataagcacggaagagacagtccattggtactt |
31900810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 848 - 913
Target Start/End: Original strand, 31964541 - 31964606
Alignment:
| Q |
848 |
ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatactt |
913 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
31964541 |
ttacaaaccagggaaaacgcgaggaagtgtggccataagcacagaagagacagtccattgatactt |
31964606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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