View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10118_low_10 (Length: 445)
Name: NF10118_low_10
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 1478709 - 1479129
Alignment:
| Q |
18 |
aaaacatatgcaagcatttggtggaaggtattataccaatctataaggtttatttgaagaattacattttgtcaattga---aaatgatgaaggtgtggt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1478709 |
aaaacatatgcaagcatttggtggaaggtattataccaatctataaggtttatttgaagaattacattttgtcaattgatcaaaatgatgaaggtgtggt |
1478808 |
T |
|
| Q |
115 |
tgataagcatattattaaatatacaacaaagagtttggagaatgagatttggtcattgtttcagccaaagatgaagaagcatgataatagcattaaacac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1478809 |
tgataagcatattattaaatatacaacaaagagtttggagaatgagatttggtcattgtttcagccaaagatgaagaagcatgataatagcattaaacac |
1478908 |
T |
|
| Q |
215 |
atagatttgattagtaaaataaaagaatttagccatcaatttcgtttaacattagctggtttatagttgtgtaatgtgttattttccttttacagggtag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1478909 |
atagatttgattagtaaaataaaagaatttagccatcaatttcgtttaacattagctggtttatagttgtgtaatgtgttattttccttttacagggtag |
1479008 |
T |
|
| Q |
315 |
atggaatgttgatctaacttctctactctttgagtgtttatgtattttatgattcttctttgagatttgagatgtgcacattttaatgttattaatgtat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1479009 |
atggaatgttgatctaacttctctactctttgagtgtttatgtattttatgattcttctttgagatttgagatgtgcacattttaatgttattaatgtat |
1479108 |
T |
|
| Q |
415 |
aataatttatttctccctatg |
435 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1479109 |
aataatttatttctccctatg |
1479129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 18289734 - 18289954
Alignment:
| Q |
24 |
tatgcaagcatttggtggaaggtattataccaatctataaggtttatttgaagaattacattttgtcaattgaaaatgatgaaggtgtggttgataagca |
123 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | | |||||||||| | |
|
|
| T |
18289734 |
tatgcaaacatttggtggaaggtattataccaatctataaggtatatttgaagaattacattttgtcacttgaaaatgatgatgctatggttgataacaa |
18289833 |
T |
|
| Q |
124 |
tattattaaatatacaacaaagagtttggagaatgagatttggtcattgtttcagccaaagatgaagaagcatgataa------tagcattaaacacata |
217 |
Q |
| |
|
| | ||||||||||| |||||||||||| |||| |||||||||||||||||| |||||| ||| |||||||| | | |||||||||||||||| |
|
|
| T |
18289834 |
gaatgttaaatatacagcaaagagtttggggaataggatttggtcattgtttcaaccaaagttgaggaagcatgctgatgctggtagcattaaacacata |
18289933 |
T |
|
| Q |
218 |
gatttgattagtaaaataaaa |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18289934 |
gatttgattagtaaaataaaa |
18289954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University