View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_13 (Length: 426)
Name: NF10118_low_13
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 35449805 - 35450204
Alignment:
| Q |
15 |
atcaacaacatcattagagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccacttt |
114 |
Q |
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| T |
35449805 |
atcaacaacatcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccacttt |
35449904 |
T |
|
| Q |
115 |
ccggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgt |
214 |
Q |
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| T |
35449905 |
ccggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgt |
35450004 |
T |
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| Q |
215 |
ttcttcaccaattattgatcaatcaatgattgaagtactaacaccaaatagaccactacctgaaaaaggtaaacttttgcaggcagtgatgaaagctggt |
314 |
Q |
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| T |
35450005 |
ttcttcaccaattattgatcaatcaatgattgaagtactaacaccaaatagaccactacctgaaaaaggtaaacttttgcaggcagtgatgaaagctggt |
35450104 |
T |
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| Q |
315 |
cctcttcttaaaactcttcttcttgcaggaccacttcctcaatggaaacaccctcctccacctcttgagtcttttgagattccacctgtctctataccta |
414 |
Q |
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| T |
35450105 |
cctcttcttaaaactcttcttcttgcaggaccacttcctcaatggaaacaccctcctccacctcttgagtcttttgagattccacctgtctctataccta |
35450204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 404
Target Start/End: Complemental strand, 21010434 - 21010303
Alignment:
| Q |
273 |
cctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggaccacttcctcaatggaaacaccctcctc |
372 |
Q |
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| T |
21010434 |
cctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcagacccttttacttgcaggaccattacctcaatggagacatccaccac |
21010335 |
T |
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| Q |
373 |
cacctcttgagtcttttgagattccacctgtc |
404 |
Q |
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| T |
21010334 |
caccattggagtcttttgagattccacctgtc |
21010303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
30 |
agagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
98 |
Q |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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