View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_15 (Length: 406)

Name: NF10118_low_15
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_15
NF10118_low_15
[»] chr4 (4 HSPs)
chr4 (1-388)||(37783389-37783776)
chr4 (181-311)||(37808709-37808839)
chr4 (213-277)||(37793003-37793067)
chr4 (213-277)||(37804086-37804150)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 37783776 - 37783389
Alignment:
Q  1 cttcatctcaaaaaagaattttgcatacaacaaactctccgtgtcttatgtttatttctcgcactttcatatatgtgtatatacgtatctatactaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783776 cttcatctcaaaaaagaattttgcatacaacaaactctccgtgtcttatgtttatttctcgcactttcatatatgtgtatatacgtatctatactaatat 37783677  T
Q  101 attagtgtaaaatgataaggatataatttctctttcatttgttaggattgggtataacgaactcaggtttattctccatgttgatttctaaagatgatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783676 attagtgtaaaatgataaggatataatttctctttcatttgttaggactgggtataacgaactcaggtttattctccatgttgatttctaaagatgatga 37783577  T
Q  201 tttattcttctttttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaaagacactgtatacaacgaaatta 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37783576 tttattcttctttttcatttctttgttcttactccaaagtactgcatatatgccacatacaatcaacactgctccaaagacactgtatacaaccaaatta 37783477  T
Q  301 tatcaaatcaattttcatgcatatcaaggttaaaaaagataacatatgaataatatatgtttaaggtagaagtatgattttatcatgt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37783476 tatcaaatcaattttcatgcatatcaaggttaaaaaagataacatatgaataatatatgtttaaggtataagtatgattttatcatgt 37783389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 37808839 - 37808709
Alignment:
Q  181 ttgatttctaaagatgatgatttattcttctttttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaaaga 280  Q
    ||||||| ||| ||| || ||| | |||| |||||||||||| ||  ||||||||||||||| ||||||| |||||| |||||||| ||||||||||| |    
T  37808839 ttgatttttaatgataataattgagtcttttttttcatttctatgcccttactccaaagcaccgcatataggccacacacaatcaatactgctccaaaaa 37808740  T
Q  281 cactgtatacaacgaaattatatcaaatcaa 311  Q
    |||| |||||||| ||| |||||||||||||    
T  37808739 cactatatacaaccaaactatatcaaatcaa 37808709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 37793067 - 37793003
Alignment:
Q  213 tttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaa 277  Q
    ||||||||||||| ||||||||||||||||  |||||| ||| || ||||||| |||||||||||    
T  37793067 tttcatttctttgctcttactccaaagcaccacatataggccgcacacaatcagcactgctccaa 37793003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 37804150 - 37804086
Alignment:
Q  213 tttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaa 277  Q
    |||||||||||||||||||||||| ||||||  ||||| ||| || || ||||||||||||||||    
T  37804150 tttcatttctttgttcttactccacagcactatatataggccgcacacgatcaacactgctccaa 37804086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University