View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_17 (Length: 371)
Name: NF10118_low_17
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 35323102 - 35322756
Alignment:
| Q |
18 |
ctatatgggtttactcactcacaagtttacacgtatgtaccatgtgaattcaatcatggtgaaaaaactgcaatgtggaatctcaaccgctagttatcaa |
117 |
Q |
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| T |
35323102 |
ctatatgggtttactcactcacaagtttacacgtatgtaccatgtgaattcaatcatggtgaaaaaactgcaatgtggaatctcaaccgctagttatcaa |
35323003 |
T |
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| Q |
118 |
tcactacacatgctaaatctattctcgtgacaaaaatatttcctaaaggaagaaaatggtcatgaggtatcattcacaagagcacatggtgaaaagactg |
217 |
Q |
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| T |
35323002 |
tcactacacatgctaaatctattctcgtgacaaaaatatttcctaaaggaagaaaatggtcatgaggtatcattcacaagagcacatggtgaaaagactg |
35322903 |
T |
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| Q |
218 |
agggtttctatatttgtccatcaagaccaatccacaaataaagagaacttggtaaattatagaatttctttcaataaacgttcatatagttataaattcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35322902 |
agggtttctatatttgtccatcaagaccaatccacaaataaagagaacttggtaaattatagaatttctttcaataaacgttcatatagttataaattcc |
35322803 |
T |
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| Q |
318 |
ataagtcacataaattacattctcaaaattattacaggtctgtgctg |
364 |
Q |
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| T |
35322802 |
ataagtcacataaattacattctcaaaattattacaggtttgtgctg |
35322756 |
T |
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