View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_18 (Length: 362)
Name: NF10118_low_18
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 56043820 - 56044039
Alignment:
| Q |
18 |
ataattgcaggcaattgtttatgtttgggtgtataacccaaaatcaaataaatatttgtataacttatatgttaatggttggttattgaatgatggtgat |
117 |
Q |
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| T |
56043820 |
ataattgcaggcaattgtttatgtttgggtgtataacccaaaatcaaataaatatttgtataacttatatgttaa----tggttattgaatgatggtgat |
56043915 |
T |
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| Q |
118 |
gaagtttgt-tttgagtcccgtgaaggttgaacgtggtcgtctagtgtactttatgttcagtgttgaaannnnnnnggtctgtagtacttgttttgttat |
216 |
Q |
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| T |
56043916 |
gaagtttgtctttgagtcccgtgaaggttgaacgtggtcgtctagtgtactttatgttcagtgttgaattttttttggtctgtagtacttgttttgttat |
56044015 |
T |
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| Q |
217 |
ctacaagtctatctggaatttgtt |
240 |
Q |
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| T |
56044016 |
ctacaagtctatctggaatttgtt |
56044039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 56044066 - 56044145
Alignment:
| Q |
273 |
ctggttgatgacgaaaaagtgtgaatttaatttggaatatatatattttttcctatctttctttcttaaaatattctgtg |
352 |
Q |
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| T |
56044066 |
ctggttgatgacgaaaaagtgtgaatttaatttggaaaatatatattttttcctatctttctttgttaaaatatgctgtg |
56044145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 47294185 - 47294226
Alignment:
| Q |
18 |
ataattgcaggcaattgtttatgtttgggtgtataacccaaa |
59 |
Q |
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| T |
47294185 |
ataattgcaggcaattgtttttctttgggtgtataatccaaa |
47294226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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