View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10118_low_19 (Length: 361)
Name: NF10118_low_19
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_19 |
 | |
|
| [»] scaffold0048 (2 HSPs) |
| | |
|
| [»] scaffold0545 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 1898138 - 1897783
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttctactgcaactattagtactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1898138 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggagatgttgaagtctctcagcctgcgggttctactgcaactattagtactac |
1898039 |
T |
|
| Q |
101 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1898038 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
1897939 |
T |
|
| Q |
201 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1897938 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
1897839 |
T |
|
| Q |
301 |
aaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1897838 |
aaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
1897783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 13488964 - 13488876
Alignment:
| Q |
192 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgca |
280 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| || |||||||| |
|
|
| T |
13488964 |
cctcctcagtactttatgccgccaggctacccgtggggcatgccgctcgcaactaatgaaggttttcgtcataatgcgccggaaatgca |
13488876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 26728941 - 26728586
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttctactgcaactattagtactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26728941 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggagatgttgaagtctctcagcctgcgggttctactgcaactattagtactac |
26728842 |
T |
|
| Q |
101 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26728841 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
26728742 |
T |
|
| Q |
201 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26728741 |
tatcatatgccgccaggctatccgtggggcatggcactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
26728642 |
T |
|
| Q |
301 |
aaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26728641 |
aaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
26728586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 34539132 - 34538777
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttctactgcaactattagtactac |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
34539132 |
ccgcacaggcacgagcctctcaagcaaaagtcgttcagactgttcagggagatgttgaagtctctcagcctgctggttctactgcaactattggtactac |
34539033 |
T |
|
| Q |
101 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
34539032 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcttgctggctctcttggttcttctattcctcctcag |
34538933 |
T |
|
| Q |
201 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34538932 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagtttccttttggacatcaac |
34538833 |
T |
|
| Q |
301 |
aaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34538832 |
aaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
34538777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 27540475 - 27540830
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttctactgcaactattagtactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||| || | |
|
|
| T |
27540475 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcaggcagatgttgaagtctctcagcctgctggttctactgcaactattagtgctcc |
27540574 |
T |
|
| Q |
101 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
27540575 |
acagcccttggtgaatcagttctcctctggtgatatgacaaatatgtataattcagggtttcgtcctgctggctctctcggttcttctattcctcctcag |
27540674 |
T |
|
| Q |
201 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
27540675 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtggtcgtcataatgcaccagaaatgcagcttccttttggacatcaac |
27540774 |
T |
|
| Q |
301 |
aaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27540775 |
aaacaccgttttatcagtccggccagccttttcctcaggctactatgacctatgct |
27540830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 75 - 356
Target Start/End: Original strand, 25702780 - 25703061
Alignment:
| Q |
75 |
ggttctactgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| | |||| ||||||||||| ||| | |
|
|
| T |
25702780 |
ggttctactgcagctattagtactacacagcctttggtgactcagttttcctctagtgatatgacaaacatgtataattcaaggtttcgtcctgctgccc |
25702879 |
T |
|
| Q |
175 |
ctcttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccaga |
274 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
25702880 |
ctcttggtttttctatccctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcgccgga |
25702979 |
T |
|
| Q |
275 |
aatgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
|||||||||||||| || || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25702980 |
aatgcagttcccttcgggtcagcaacaaacaccgttttatcagcccggccagccttttcctcaggccactatgacctatgct |
25703061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25702643 - 25702708
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctc |
66 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
25702643 |
ccgcacaagcacaagcctctcaagcaaaagttgtgcagactgttcaggctgatgttgaagtctctc |
25702708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 16763897 - 16764252
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttctactgcaactattagtactac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||| | |||||| |||||||| ||||||||| ||| ||| |
|
|
| T |
16763897 |
ccgcacaggcacaagcctctcaagcaaaagttgttcagactgttcgggcagatgttgaagtctcacagcctgctggttctaccgcaactattggtattac |
16763996 |
T |
|
| Q |
101 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16763997 |
acagcctttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctgctggctctcttggttcttctattcctcctcag |
16764096 |
T |
|
| Q |
201 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16764097 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttttcttttggacatcaac |
16764196 |
T |
|
| Q |
301 |
aaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16764197 |
aaacaccgttttatcagtccggccagccttgtcctcaggccactatgacctatgct |
16764252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 76 - 356
Target Start/End: Original strand, 23919466 - 23919746
Alignment:
| Q |
76 |
gttctactgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttc-gtcctactggct |
174 |
Q |
| |
|
||||||||||| || || |||||||||| || ||||||| | |||||||||||||||||||| |||| ||||||| | | ||||||| ||||||||||| |
|
|
| T |
23919466 |
gttctactgcagctgttggtactacacaacctttggtgactgagttttcctctggtgatatggcaaacatgtacaatcc-gggtttctgtcctactggcc |
23919564 |
T |
|
| Q |
175 |
ctcttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccaga |
274 |
Q |
| |
|
|| |||||| || | ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
23919565 |
cttttggtttctcattccctcctcagtactatatgcctccaggctatccgtggggcatgccactcgcaactaatgaaggtgttcgtcctaatgcaccgaa |
23919664 |
T |
|
| Q |
275 |
aatgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
|||||||||||||||||| || ||||||| | ||||||||||| ||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
23919665 |
aatgcagttcccttttggtcagcaacaaacatcgttttatcagcccgaccagccttttcctcaggctactatgatctatgct |
23919746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 25770836 - 25771023
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttct-------------------- |
80 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||||| |||||| |||||| |
|
|
| T |
25770836 |
ccgcacaggcacaagcctctcaagcaaaagctgttcagactgttcgggcagatgttgaagtctctcagcctgctggttctccggtgacccagccaatttc |
25770935 |
T |
|
| Q |
81 |
-actgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcct |
167 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
25770936 |
tactgcaactattggtactacacagcctttggtgaatcagttttcctctggtgatatgacaaacatgtataattcagggtttcgtcct |
25771023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 1886778 - 1886423
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttctactgcaactattagtactac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||| | |||||| |||||||| ||||||||| ||| ||| |
|
|
| T |
1886778 |
ccgcacaggcacaagcctctcaagcaaaagttgttcagactgttcgggcagatgttgaagtctcacagcctgctggttctaccgcaactattggtattac |
1886679 |
T |
|
| Q |
101 |
acagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctcttggttcttctattcctcctcag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1886678 |
acagcctttggtgaatcagttttcctctggtgatatgacaaatatgtatagttcagggtttcgtcctgctggctctcttggttcttctattcctcctcag |
1886579 |
T |
|
| Q |
201 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttggacatcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1886578 |
tatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttttcttttggacatcaac |
1886479 |
T |
|
| Q |
301 |
aaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1886478 |
aaacaccgttttatcagtccggccagccttgtcctcaggccactatgacctatgct |
1886423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 22151078 - 22150915
Alignment:
| Q |
192 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttg |
291 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
22151078 |
cctcctcagtactgtatgccgccaggctacccgtggggcatgccactcgcaactaatgaaggttttcgtcataatgcgccggaaatgcagttccctcttg |
22150979 |
T |
|
| Q |
292 |
gacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgc |
355 |
Q |
| |
|
| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
22150978 |
gccagcaacaaacaccgttctaccagaccggccagccttttcctcaggctactatgacttatgc |
22150915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 4438621 - 4438997
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgcgggttct-------------------- |
80 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||||| |||||| |||||| |
|
|
| T |
4438621 |
ccgcacaggcacaagcctctcaagcaaaagctgttcagactgttcgggcagatgttgaagtctctcagcctgctggttctccggtgacccagccaatttc |
4438720 |
T |
|
| Q |
81 |
-actgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctctctt |
179 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
4438721 |
tactgcaactattggtactacacagcctttggtgaatcagttttcctctggtgatatgacaaacatgtataattcagggtttcgtcctgctggctctctt |
4438820 |
T |
|
| Q |
180 |
ggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgc |
279 |
Q |
| |
|
|||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4438821 |
ggtttttatatccctcctcagtatcatatgccgccaggctatccgtggggcatgccactcacaaataatgaaggtgttcgtcataatgcaccggaaatgc |
4438920 |
T |
|
| Q |
280 |
agttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4438921 |
agttcccttttggtcagcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
4438997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 77 - 338
Target Start/End: Complemental strand, 18950810 - 18950549
Alignment:
| Q |
77 |
ttctactgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctct |
176 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||| |||||||| |
|
|
| T |
18950810 |
ttctactgcaactattggtactacacagcctttggtgaatcagttttcctcaggtgatatgacaaacatgtataattcagggtttcgtcctgctggctct |
18950711 |
T |
|
| Q |
177 |
cttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaa |
276 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18950710 |
cttggtttttctatccctcctcagtatcatatgccgccaggctatctgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaa |
18950611 |
T |
|
| Q |
277 |
tgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcag |
338 |
Q |
| |
|
||||||||||| |||| || ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18950610 |
tgcagttccctattggtcagcaacaaacaccattttatcagtccggccagccttttcctcag |
18950549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 192 - 356
Target Start/End: Complemental strand, 6968006 - 6967842
Alignment:
| Q |
192 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttg |
291 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
6968006 |
cctcctcagtactgtatgccgccaggctacccgtggggcatgccgctcgcaactaatgaaggtcttcgtcataatgcgccggaaatgcagttccctcttg |
6967907 |
T |
|
| Q |
292 |
gacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
6967906 |
gccagcaacaaacaccgttctaccagaccggccagccttttcctcaggctactatgacttatgct |
6967842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18950907 - 18950835
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgc |
73 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||| | | |||||||||||||| |||||| |
|
|
| T |
18950907 |
ccgcacaggtacaagcctctcaagcaaaagttgttcagactgttcgagcagatgttgaagtctcttagcctgc |
18950835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18879240 - 18879212
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaa |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18879240 |
ccgcacaggcacaagcctctcaagcaaaa |
18879212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 77 - 356
Target Start/End: Complemental strand, 20393505 - 20393226
Alignment:
| Q |
77 |
ttctactgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctct |
176 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
20393505 |
ttctactgcaactattggtactacacaacctttggtgaatcagttttccgctggtgatatgacaaacatgtacaattcagggtttcgtcctgctggctct |
20393406 |
T |
|
| Q |
177 |
cttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaa |
276 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
20393405 |
cttggtttttctatcccccctcagtatcatatgccgccaggctatcagtggggaatgccactcgcaaataatgaaggtgttcatcataatgcaccggaaa |
20393306 |
T |
|
| Q |
277 |
tgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20393305 |
tgcagttcccttttggtcagcaacaaacaccgttttatcagtccggccagccttttcctcaggccactatgacctgtgct |
20393226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 356643 - 356480
Alignment:
| Q |
192 |
cctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaatgcagttcccttttg |
291 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
356643 |
cctcctcagtactgtatgccgccaggctacccgtggggcatgccgctcgcaactaatgaaggttttcgtcataatgcgccggaaatgcagttccctcttg |
356544 |
T |
|
| Q |
292 |
gacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgc |
355 |
Q |
| |
|
| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
356543 |
gccagcaacaaacaccgttctaccagaccggccagccttttcctcaggctactatgacttatgc |
356480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20393602 - 20393532
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcct |
71 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||| || | ||||||||||||||| |||| |
|
|
| T |
20393602 |
ccgcataggcacaagcctcttaagcaaaagctgttcagactgttctggcagatgttgaagtctctcagcct |
20393532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 75 - 356
Target Start/End: Complemental strand, 385 - 104
Alignment:
| Q |
75 |
ggttctactgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||| ||||| |
|
|
| T |
385 |
ggttctactgcagctattagtactacacagcctttggtgactcagttttcctctggtgatatgacaaacatgtataattcagggcttcgtcctgctggcc |
286 |
T |
|
| Q |
175 |
ctcttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccaga |
274 |
Q |
| |
|
||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
285 |
ctcctggtttttctatccctcatcagtatcatatgccgccaggctatccgtggggcatgccgctcgcaactaatgaaggtgttcgtcataatgcgctaga |
186 |
T |
|
| Q |
275 |
aatgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
|| |||||||||||| || || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
185 |
aacgcagttccctttcggtcaacaacaaacaccgttttatcagcccggccagccttttcctcaggccactatgacctatgct |
104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 522 - 450
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctccgcctgc |
73 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
522 |
ccgcacaggcacaagcctctcaagcaaaagttgttcagactgttcaggcggatgttgaagtctctcagcctgc |
450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 77 - 356
Target Start/End: Original strand, 13455217 - 13455496
Alignment:
| Q |
77 |
ttctactgcaactattagtactacacagcccttggtgaatcagttttcctctggtgatatgacaaatatgtacagttcagggtttcgtcctactggctct |
176 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||| ||| ||||||||| ||||| ||||||| ||||| | |||||||||||||||| ||||| || |
|
|
| T |
13455217 |
ttctactgcagctattactactacacagcctttggtgactcaattttcctctagtgatgtgacaaacatgtataattcagggtttcgtcctgctggccct |
13455316 |
T |
|
| Q |
177 |
cttggttcttctattcctcctcagtatcatatgccgccaggctatccgtggggcatgccactcgcaaataatgaaggtgttcgtcataatgcaccagaaa |
276 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| |
|
|
| T |
13455317 |
cttggtttttctacccctcctcagtatcatatgccaccaggctatccgtggggcatgccactcgcaactaatgaaggtgttcgtcataatgcgccggaaa |
13455416 |
T |
|
| Q |
277 |
tgcagttcccttttggacatcaacaaataccgttttatcagtccggccagccttttcctcaggccactatgacctatgct |
356 |
Q |
| |
|
|||||||||||| || || ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13455417 |
tgcagttcccttcgggtcagcaacaaacaccgttttatcagcccggccagccttttcctcaggccaccatgacctatgct |
13455496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13455120 - 13455185
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagggaaatgttgaagtctctc |
66 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
13455120 |
ccgcacaggcacaagcatctcaagcaaaagttgtgcagactgttcaggcagatgttgaagtctctc |
13455185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0545 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0545
Description:
Target: scaffold0545; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4906 - 4859
Alignment:
| Q |
1 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagg |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4906 |
ccgcacaggcacaagcctctcaagcaaaaattgttcagactgttcagg |
4859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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