View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_2 (Length: 669)

Name: NF10118_low_2
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_2
NF10118_low_2
[»] chr6 (11 HSPs)
chr6 (14-655)||(33575820-33576461)
chr6 (221-448)||(33568841-33569068)
chr6 (16-448)||(5978679-5979111)
chr6 (209-448)||(19746680-19746919)
chr6 (223-421)||(34861884-34862082)
chr6 (480-655)||(5979182-5979357)
chr6 (16-85)||(33568636-33568705)
chr6 (609-655)||(34861629-34861675)
chr6 (366-415)||(14749399-14749448)
chr6 (55-101)||(19747033-19747079)
chr6 (322-415)||(24254445-24254538)
[»] scaffold0707 (2 HSPs)
scaffold0707 (221-655)||(5235-5669)
scaffold0707 (16-85)||(5030-5099)
[»] chr3 (5 HSPs)
chr3 (19-453)||(36339770-36340204)
chr3 (208-411)||(25901302-25901505)
chr3 (208-411)||(25915320-25915523)
chr3 (381-418)||(3837926-3837963)
chr3 (366-415)||(32578884-32578933)
[»] chr5 (1 HSPs)
chr5 (225-427)||(23086643-23086845)
[»] chr8 (4 HSPs)
chr8 (333-453)||(11345082-11345202)
chr8 (333-453)||(11339400-11339520)
chr8 (333-449)||(11358964-11359080)
chr8 (333-443)||(11338567-11338677)
[»] chr7 (33 HSPs)
chr7 (334-453)||(24031225-24031344)
chr7 (334-453)||(24021738-24021857)
chr7 (209-423)||(26256620-26256834)
chr7 (359-427)||(23999462-23999530)
chr7 (322-415)||(16839400-16839493)
chr7 (366-421)||(22063644-22063699)
chr7 (336-423)||(23993507-23993594)
chr7 (325-411)||(19637240-19637326)
chr7 (365-418)||(6864823-6864876)
chr7 (318-423)||(15443918-15444023)
chr7 (322-415)||(16846483-16846576)
chr7 (358-415)||(24002193-24002250)
chr7 (366-423)||(26217969-26218026)
chr7 (209-258)||(26237459-26237508)
chr7 (322-415)||(36263011-36263104)
chr7 (322-418)||(19597671-19597767)
chr7 (333-421)||(22070080-22070168)
chr7 (381-421)||(22100510-22100550)
chr7 (336-423)||(24016760-24016847)
chr7 (373-415)||(19357919-19357961)
chr7 (29-79)||(24035416-24035466)
chr7 (40-98)||(26237278-26237336)
chr7 (366-415)||(660866-660915)
chr7 (322-415)||(19344594-19344687)
chr7 (366-415)||(19722020-19722069)
chr7 (358-415)||(24010377-24010434)
chr7 (221-258)||(24016646-24016683)
chr7 (40-85)||(26229881-26229926)
chr7 (366-423)||(26230219-26230276)
chr7 (381-421)||(22080885-22080925)
chr7 (359-423)||(24035746-24035810)
chr7 (41-85)||(24391079-24391123)
chr7 (359-411)||(36260248-36260300)
[»] chr4 (8 HSPs)
chr4 (325-443)||(23840636-23840754)
chr4 (325-443)||(23847168-23847286)
chr4 (317-428)||(8443460-8443571)
chr4 (322-423)||(10460583-10460684)
chr4 (334-415)||(53774810-53774891)
chr4 (322-411)||(35766976-35767065)
chr4 (41-89)||(3557388-3557436)
chr4 (208-284)||(10571426-10571502)
[»] chr2 (5 HSPs)
chr2 (366-428)||(25377076-25377138)
chr2 (366-415)||(18908828-18908877)
chr2 (366-415)||(18913576-18913625)
chr2 (366-415)||(18920784-18920833)
chr2 (211-259)||(25376921-25376969)
[»] chr1 (4 HSPs)
chr1 (348-428)||(50645491-50645571)
chr1 (29-79)||(17954036-17954086)
chr1 (41-88)||(39379422-39379469)
chr1 (359-415)||(39379080-39379136)
[»] scaffold0267 (1 HSPs)
scaffold0267 (381-418)||(13407-13444)
[»] scaffold0867 (1 HSPs)
scaffold0867 (381-421)||(4682-4722)


Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 14 - 655
Target Start/End: Original strand, 33575820 - 33576461
Alignment:
Q  14 caaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgat 113  Q
    |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33575820 caaaagtttatggagaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctattttgggaaatgat 33575919  T
Q  114 ggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttg 213  Q
    |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575920 ggtgttcattttagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttg 33576019  T
Q  214 agaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagt 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33576020 agaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgcttcctacgggttttaaggagctgccttatgataagccatcagt 33576119  T
Q  314 tcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggact 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576120 tcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggact 33576219  T
Q  414 cagttatttagaattgaatacgttaatcttcaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatat 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576220 cagttatttagaattgaatacgttaatcttcaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatat 33576319  T
Q  514 ttacaactgaaataaccaacaaagtatttatctataatcggcaagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccat 613  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576320 ttacaactgaaataaccaacaaagtatttatctataatcggagagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccat 33576419  T
Q  614 tgaatacgttgaaagcttagttccaactccttggaagtaagt 655  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33576420 tgaatacgttgaaagcttagttccaactccttggaagtaagt 33576461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 221 - 448
Target Start/End: Original strand, 33568841 - 33569068
Alignment:
Q  221 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagtt 320  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |||| | ||    |||||| ||||  ||     
T  33568841 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgccatgtgtggtgccatctgttcaggta 33568940  T
Q  321 ctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttat 420  Q
    |||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||    
T  33568941 ctgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttat 33569040  T
Q  421 ttagaattgaatacgttaatcttcaaat 448  Q
    ||||||||||||| ||||||||||||||    
T  33569041 ttagaattgaatatgttaatcttcaaat 33569068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 5978679 - 5979111
Alignment:
Q  16 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatgg 115  Q
    ||||||||||||||||||||||    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| || | || ||||||||    
T  5978679 aaggtttatggagaagcaaggtgagggttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctcttatcgggaatgatgg 5978778  T
Q  116 tgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgag 215  Q
    |||  |||  ||||||||  |||| ||| ||||||||||| ||||||| |    | ||   | ||||| |||| || || ||   |||  ||  ||| ||    
T  5978779 tgtgcatttgagtggaacggttaattggctagctattcacggtgactatgttggactttctgatggagaaacagttcaagcttcaattcctcacgttcag 5978878  T
Q  216 aaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttc 315  Q
     ||| |||||||| ||| ||||||||||| |||||||| ||||  |   |||||||||| |||| |||||| ||| |||| |  | | |||||||  |||    
T  5978879 caatttgtgattgcttctcttgatctttcaacagagacgtacaaccggcttttgcttccaaaggattttaatgaggtgccatgcgttgagccatctcttc 5978978  T
Q  316 gagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    | ||||||||||| || ||||| |||||||| ||||| ||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  5978979 gggttctgatggattgtctttgcttttcgcatgatttcaagagaaccgaatttgttatatggctgatgaaggagtttggagtccaagagtcttggactca 5979078  T
Q  416 gttatttagaattgaatacgttaatcttcaaat 448  Q
    |||||||||| ||||||| ||||||||||||||    
T  5979079 gttatttagatttgaatatgttaatcttcaaat 5979111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 209 - 448
Target Start/End: Complemental strand, 19746919 - 19746680
Alignment:
Q  209 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagcca 308  Q
    ||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||    |||||| | ||  | ||  |   | |||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtcccacactttcagcca 19746820  T
Q  309 tcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtctt 408  Q
     |  |||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   |||||| |||||||||||||||||||||    
T  19746819 actcttcatgttctgatggactgcctttgcttttcgcacgatttcaagggaactgaatttgttatatggcaaatgaagaagtttggagttcaagagtctt 19746720  T
Q  409 ggactcagttatttagaattgaatacgttaatcttcaaat 448  Q
    |||||  ||||||||||||||| ||| |||||||| ||||    
T  19746719 ggactttgttatttagaattgactactttaatcttgaaat 19746680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 223 - 421
Target Start/End: Complemental strand, 34862082 - 34861884
Alignment:
Q  223 tgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttct 322  Q
    |||||| ||||||||||||||| || |||||||||| | | || |||||||| ||||||||||| ||| |||| | || | ||||||   |||| |||||    
T  34862082 tgattgcttcgcttgatctttccaccgagacatacaaatatttgttgcttcccaagggttttaaagagttgccatgtgctgagccatatcttcgggttct 34861983  T
Q  323 gatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    | |||| |||||||| |||| ||| ||||||| |  |||||||||||||||||||   |||||||||||||||||||  ||||||||||||| ||||||    
T  34861982 gttggattgcctttgctttttgcatgattttaggaaaactgaatttgttatatggcaaatgaaggagtttggagttcgggagtcttggactcggttatt 34861884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 655
Target Start/End: Original strand, 5979182 - 5979357
Alignment:
Q  480 ttgtacttttcgaagaatggagatacattgatatttacaactgaaataaccaacaaagtatttatctataatcggcaagataagacagtagagataacaa 579  Q
    |||||| ||||||||||||||||||||||||| || |||| ||| | |  ||| | |||| ||||||||||||||  |||||||| |||||||| ||       
T  5979182 ttgtacctttcgaagaatggagatacattgatcttgacaaatgataaagacaaaagagtaattatctataatcggagagataagagagtagagagaattg 5979281  T
Q  580 tatttgacaacagaatacgttggacatcggccattgaatacgttgaaagcttagttccaactccttggaagtaagt 655  Q
     | ||  ||||| |||| |||||   || |||||||| ||| |||||||||| ||| | |||| ||||||||||||    
T  5979282 gaatttccaacaaaataagttggttctccgccattgattacattgaaagcttggtttcgactcattggaagtaagt 5979357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 33568636 - 33568705
Alignment:
Q  16 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 85  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568636 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 609 - 655
Target Start/End: Complemental strand, 34861675 - 34861629
Alignment:
Q  609 gccattgaatacgttgaaagcttagttccaactccttggaagtaagt 655  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||    
T  34861675 gccatggattacgttgaaagcttagttccgactccttggaagtaagt 34861629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 14749399 - 14749448
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||| |||||| ||||| ||| ||||||||||||||||||||||||||    
T  14749399 tttgttttatggaggatgatggaatttggagttcaagagtcttggactca 14749448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  55 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 101  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 24254538 - 24254445
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||||||||||||||| ||| || | ||| ||||| | ||||||||||||  ||||  ||| ||||||||  || | |||||||||||    
T  24254538 tgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactca 24254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 221 - 655
Target Start/End: Original strand, 5235 - 5669
Alignment:
Q  221 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagtt 320  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |||| | ||    |||||| ||||  ||     
T  5235 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgccatgtgtggtgccatctgttcaggta 5334  T
Q  321 ctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttat 420  Q
    |||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||    
T  5335 ctgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttat 5434  T
Q  421 ttagaattgaatacgttaatcttcaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatatttacaac 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5435 ttagaattgaatacgttaatcttcaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatatttacaac 5534  T
Q  521 tgaaataaccaacaaagtatttatctataatcggcaagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccattgaatac 620  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5535 tgaaataaccaacaaagtatttatctataatcggagagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccattgaatac 5634  T
Q  621 gttgaaagcttagttccaactccttggaagtaagt 655  Q
    |||||||||||||||||||||||||||||||||||    
T  5635 gttgaaagcttagttccaactccttggaagtaagt 5669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 5030 - 5099
Alignment:
Q  16 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 85  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5030 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 36339770 - 36340204
Alignment:
Q  19 gtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgt 118  Q
    |||||||||||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |||||||||||    
T  36339770 gtttatggagaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatggaatgatggtgt 36339869  T
Q  119 atattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaa 218  Q
      |||  |||||| ||||||||||||| ||| ||    | |||| || | |||||||   ||||| ||||  |||| ||  ||||  || ||||||| ||    
T  36339870 gcatttgagtggagctattaactggttggctctttctggcgacttcgtatcaattgattgtggagaaacaagtaaagcttatattcctcttgttgagcaa 36339969  T
Q  219 tgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgag 318  Q
    |  |||||||||||||||||||||||||| ||||||||||  || ||||||||||||   |||||||||||| |||| |  | | |||||||  |||| |    
T  36339970 ttggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagccatctcttcggg 36340069  T
Q  319 ttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagtt 418  Q
    ||||||||||||||||||| ||||| |||||||| ||| ||||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||||||    
T  36340070 ttctgatggactgcctttgcttttcacacgatttcaagagaactgaatttgtgatatggcagatgaaggagtttggatctcaagagtcttggactcagtt 36340169  T
Q  419 atttagaattgaatacgttaatcttcaaatacata 453  Q
    |||||||||| ||||| ||||||||||||| ||||    
T  36340170 atttagaattaaatacattaatcttcaaatccata 36340204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 411
Target Start/End: Complemental strand, 25901505 - 25901302
Alignment:
Q  208 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagcc 307  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  ||||||| | ||| ||||   || | ||||    
T  25901505 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagcc 25901406  T
Q  308 atcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtct 407  Q
    | || ||   ||| ||||||||| ||||||||||   || ||||| |||||||   | |||||||||||||  |||||||| ||| ||||||||||||||    
T  25901405 aacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtct 25901306  T
Q  408 tgga 411  Q
    ||||    
T  25901305 tgga 25901302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 411
Target Start/End: Complemental strand, 25915523 - 25915320
Alignment:
Q  208 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagcc 307  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  ||||||| | ||| ||||   || | ||||    
T  25915523 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaggtgccacgtgttcagcc 25915424  T
Q  308 atcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtct 407  Q
    | || ||   ||| ||||||||| ||||||||||   || ||||| |||||||   | |||||||||||||  |||||||| ||| ||||||||||||||    
T  25915423 aacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtct 25915324  T
Q  408 tgga 411  Q
    ||||    
T  25915323 tgga 25915320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 3837926 - 3837963
Alignment:
Q  381 atgaaggagtttggagttcaagagtcttggactcagtt 418  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3837926 atgaaagagtttggagttcaagagtcttggactcagtt 3837963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 32578933 - 32578884
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||| |||||||||||| |||||  |||||||| ||||||||||||||    
T  32578933 tttgttttatggatgatgatggagtacggagttcacgagtcttggactca 32578884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 225 - 427
Target Start/End: Original strand, 23086643 - 23086845
Alignment:
Q  225 attgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttctga 324  Q
    ||||||||||||||||| || || ||||||||||  || || ||||| ||| | |||||| | ||| ||||  |  || |||||||  |||  |||||||    
T  23086643 attgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctcttcatgttctga 23086742  T
Q  325 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttag 424  Q
     |||||||||||| |||||||| |||||||||   | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  23086743 aggactgcctttgcttttcgcatgattttaagacgattgaatttgttatatggcagatgaaggagtttggagttcaagagtcttggactcagttgtttag 23086842  T
Q  425 aat 427  Q
    |||    
T  23086843 aat 23086845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 333 - 453
Target Start/End: Complemental strand, 11345202 - 11345082
Alignment:
Q  333 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 432  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||   ||| | ||||||||| ||||||| ||||||||||| |||||||||||||| |    
T  11345202 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaattatttagaattgact 11345103  T
Q  433 acgttaatcttcaaatacata 453  Q
    || ||||||||||||| ||||    
T  11345102 actttaatcttcaaatgcata 11345082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 453
Target Start/End: Complemental strand, 11339520 - 11339400
Alignment:
Q  333 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 432  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||   ||||  ||||||||| ||||||| ||||||||||| |||||||||||||| |    
T  11339520 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaattatttagaattgact 11339421  T
Q  433 acgttaatcttcaaatacata 453  Q
    || |||||||| |||| ||||    
T  11339420 actttaatcttgaaatgcata 11339400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 11359080 - 11358964
Alignment:
Q  333 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 432  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||   ||||| ||| | ||| ||||||| ||||||||||| |||||||||||||| |    
T  11359080 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatgaaagagatgggatttcaagaatcttggactcaattatttagaattgact 11358981  T
Q  433 acgttaatcttcaaata 449  Q
    ||  ||||||| |||||    
T  11358980 actctaatcttgaaata 11358964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 11338677 - 11338567
Alignment:
Q  333 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 432  Q
    ||||| ||||| || ||||| |||  |||||||||||||||||||   ||||| ||||||||| ||||||| |||||| |||| ||||||||| || | |    
T  11338677 ctttgcttttcacatgatttcaagcaaactgaatttgttatatggcaaatgaaagagtttggatttcaagaatcttggtctcaattatttagagttaact 11338578  T
Q  433 acgttaatctt 443  Q
    || ||||||||    
T  11338577 actttaatctt 11338567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 24031225 - 24031344
Alignment:
Q  334 tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaata 433  Q
    |||| |||||||||||||| |||  |||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||  ||||||||||||  ||    
T  24031225 tttgcttttcgcacgatttcaagaaaactgaatttgtcatatggaaaatgaatgagtttggagttcaagagtcttggactcaactatttagaattggcta 24031324  T
Q  434 cgttaatcttcaaatacata 453  Q
    | |||||||| |||| ||||    
T  24031325 ctttaatcttgaaatgcata 24031344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 24021738 - 24021857
Alignment:
Q  334 tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaata 433  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||  ||||| ||||||||| ||| ||||||||||||||   |||||||||||| |||    
T  24021738 tttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggaattcgagagtcttggactcgactatttagaattggata 24021837  T
Q  434 cgttaatcttcaaatacata 453  Q
    | || ||||| |||| ||||    
T  24021838 ctttgatcttgaaatgcata 24021857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 209 - 423
Target Start/End: Original strand, 26256620 - 26256834
Alignment:
Q  209 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagcca 308  Q
    ||||||| ||| ||||||| |||||||||||||||| || ||||||||||  || || ||||| ||| | |||||| | ||| |||| | || | |||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccatttgttcagcca 26256719  T
Q  309 tcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtctt 408  Q
        ||   ||| ||||||| |||||||||||||| || |||   |||| || ||| |||||| |||||  ||||||||||| |||||||||||||||||    
T  26256720 gttcttaaggttttgatggaatgcctttgtttttctcatgataccaaggaaaatgattttgttttatggcagatgaaggagtatggagttcaagagtctt 26256819  T
Q  409 ggactcagttattta 423  Q
    ||||||| |||||||    
T  26256820 ggactcaattattta 26256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 23999530 - 23999462
Alignment:
Q  359 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaat 427  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||| |||||| |||||||||||||    
T  23999530 aactgaatttgttatatggaaaatgaaggagtttggagttcaaaagtcgtggacttagttatttagaat 23999462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 16839493 - 16839400
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||||||||||||||| || | | |||||  |||| |  |||||||||||| |||||  || | ||||||||||||||||||||||||    
T  16839493 tgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactca 16839400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 22063644 - 22063699
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    ||||||||||||   |||||||| |||||| |||||||||||||||||||||||||    
T  22063644 tttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttatt 22063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 23993507 - 23993594
Alignment:
Q  336 tgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 423  Q
    |||||||| |||||||  || | ||||||||||||| |||||   ||||||||||  || |||||||||||||||||||| |||||||    
T  23993507 tgtttttctcacgattccaatgaaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattattta 23993594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 411
Target Start/End: Complemental strand, 19637326 - 19637240
Alignment:
Q  325 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 411  Q
    |||||| |||||| || || || |||||||| |||||||| ||| ||||||||   |||||||| ||||||||||||||||| ||||    
T  19637326 tggactccctttgcttgtctcatgattttaatggaactgattttattatatggcaaatgaaggaatttggagttcaagagtcgtgga 19637240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 6864876 - 6864823
Alignment:
Q  365 atttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagtt 418  Q
    |||||| |||||| | |||||||| ||||||||| |||||||||||||||||||    
T  6864876 atttgtaatatggttaatgaaggaatttggagttgaagagtcttggactcagtt 6864823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 15443918 - 15444023
Alignment:
Q  318 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 417  Q
    ||||||||||| || |||||||||||  | ||||  ||   ||||| ||||||| |||||   |||||||||| ||||||| |||||||||||||||| |    
T  15443918 gttctgatggattgtctttgtttttcttatgattccaatacaactggatttgttttatggcatatgaaggagtatggagttgaagagtcttggactcaat 15444017  T
Q  418 tattta 423  Q
    ||||||    
T  15444018 tattta 15444023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 16846576 - 16846483
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||||||||||||||| || | | | |||  |||| |  |||||||||||| |||||  || | ||||||||||||||||||||||||    
T  16846576 tgatggactgcctttgtttttctcatgttgtcaagcaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactca 16846483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 24002193 - 24002250
Alignment:
Q  358 gaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||||||| |||||   ||||||||||  |||||||||||||||||||||||    
T  24002193 gaactgaatttgttttatggcatatgaaggagtacggagttcaagagtcttggactca 24002250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 26217969 - 26218026
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 423  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||| |||| |||||||    
T  26217969 tttgttttatggcagatgaaggagtatggagttcaagagtcttggtctcaattattta 26218026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 26237459 - 26237508
Alignment:
Q  209 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 258  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 36263011 - 36263104
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||| ||||| |||||  | || | ||||  |||||| ||||||||||||| |||| | || ||||||||| ||||||||||||||||    
T  36263011 tgatggactgtctttgcttttctaatgactataagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggactca 36263104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 19597767 - 19597671
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagtt 418  Q
    ||||||| | |||||||||||  || |||||| | |||||||| ||| | ||||||  ||||||||| |||| |||| ||||||| |||||||||||    
T  19597767 tgatggattccctttgtttttgtcatgattttcatggaactgattttatcatatggcagatgaaggaatttgaagttgaagagtcatggactcagtt 19597671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 22070080 - 22070168
Alignment:
Q  333 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    ||||||||||| || ||||| ||  ||||| | ||| ||||||||   |||||| | ||||||||||||||||||||||||| ||||||    
T  22070080 ctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttatt 22070168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 22100510 - 22100550
Alignment:
Q  381 atgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  22100510 atgaagaaatttggagttcaagagtcttggactcagttatt 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 24016760 - 24016847
Alignment:
Q  336 tgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 423  Q
    |||||||| || ||||| |||  || |||||||||| |||||  ||||||||||| |||  ||||||||||||||||| | |||||||    
T  24016760 tgtttttctcatgatttcaagaaaagtgaatttgttttatggcagatgaaggagtatgggtttcaagagtcttggactaaattattta 24016847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 19357919 - 19357961
Alignment:
Q  373 tatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||    
T  19357919 tatggaagatgatggaatttggagttcaagagtcttggactca 19357961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  29 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 79  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  40 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 98  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 660915 - 660866
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    ||||||||||||  ||||||||| ||| ||||| ||||||||||||||||    
T  660915 tttgttatatggcagatgaaggaatttcgagttgaagagtcttggactca 660866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 19344687 - 19344594
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||||||||||||||| ||| || | |||   ||| | ||||||||||||  ||||| ||| ||||||||| || | |||||||||||    
T  19344687 tgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 19722020 - 19722069
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||| |||||| ||||| ||| |||||||||||||| |||||||||||    
T  19722020 tttgttttatggaagatgatggaatttggagttcaagattcttggactca 19722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 24010377 - 24010434
Alignment:
Q  358 gaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||||||||||| |||||   ||||||||||  || ||||||||||||||||||||    
T  24010377 gaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactca 24010434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 24016646 - 24016683
Alignment:
Q  221 tgtgattgtttcgcttgatctttcgacagagacataca 258  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  24016646 tgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  40 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 85  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 26230219 - 26230276
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 423  Q
    |||||| |||||  |||||| |||| ||||||||||||||||||| |||| |||||||    
T  26230219 tttgttttatggcagatgaaagagtatggagttcaagagtcttggtctcaattattta 26230276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 22080885 - 22080925
Alignment:
Q  381 atgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  22080885 atgaagcaatttggagttcaagagtcttggactcggttatt 22080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 24035746 - 24035810
Alignment:
Q  359 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 423  Q
    ||||||||| ||| |||||   ||||||||||  || |||||||||||||||||||| |||||||    
T  24035746 aactgaattggttttatggcaaatgaaggagtacggcgttcaagagtcttggactcaattattta 24035810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  41 agttttcaatttgggtgataattgttggagaaatattcaaagttt 85  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 36260248 - 36260300
Alignment:
Q  359 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 411  Q
    |||||| ||||||||||||| |||| | || ||||||||| ||||||||||||    
T  36260248 aactgattttgttatatggaagatggaagaatttggagttgaagagtcttgga 36260300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 443
Target Start/End: Original strand, 23840636 - 23840754
Alignment:
Q  325 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttag 424  Q
    ||||| ||||||| |||||||| ||||| |||  ||||||||||||||||||    | |||  ||||||| ||||| |||||||||||||| ||||||||    
T  23840636 tggaccgcctttgcttttcgcatgatttcaagaaaactgaatttgttatatgacaaaggaaatagtttggggttcaggagtcttggactcaattatttag 23840735  T
Q  425 aattgaatacgttaatctt 443  Q
    |||||| ||| ||||||||    
T  23840736 aattgactactttaatctt 23840754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 325 - 443
Target Start/End: Complemental strand, 23847286 - 23847168
Alignment:
Q  325 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttag 424  Q
    ||||| ||||||| |||||||| ||||| |||  |   |||||||||| ||||   ||||| |||||| | ||||||||||||| |||||||||||||||    
T  23847286 tggaccgcctttgcttttcgcatgatttcaagaaattagaatttgttacatggcaaatgaaagagtttagggttcaagagtcttagactcagttatttag 23847187  T
Q  425 aattgaatacgttaatctt 443  Q
    |||||| ||| ||||||||    
T  23847186 aattgactactttaatctt 23847168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 428
Target Start/End: Complemental strand, 8443571 - 8443460
Alignment:
Q  317 agttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcag 416  Q
    |||| |||||||||| |||||||||||  | ||||| ||| ||||| | | |||||| |||  ||||||||| ||||||||||| |||||||||| |||     
T  8443571 agttttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaa 8443472  T
Q  417 ttatttagaatt 428  Q
    ||||||| ||||    
T  8443471 ttatttaaaatt 8443460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 423
Target Start/End: Original strand, 10460583 - 10460684
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    |||||||||| |||||||| ||  | ||||||||||||||| | ||||| |||||   ||||||| | ||||||||||| ||||| |||||||| |||||    
T  10460583 tgatggactgtctttgtttctcttatgattttaagggaactcattttgtgatatgacagatgaagaattttggagttcacgagtcatggactcaattatt 10460682  T
Q  422 ta 423  Q
    ||    
T  10460683 ta 10460684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 53774810 - 53774891
Alignment:
Q  334 tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    ||||||||||  | |||||||| | |||| | ||||||||||||   |||||||| ||||||||| ||||||||||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactca 53774891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 411
Target Start/End: Original strand, 35766976 - 35767065
Alignment:
Q  322 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 411  Q
    |||||||||| ||||| |||||  | |||| || | ||||| | ||||||||||||| |||| | || ||||||||| ||||||||||||    
T  35766976 tgatggactgtctttgcttttctaatgattatatgtgaactcattttgttatatggaagatggaagaatttggagttgaagagtcttgga 35767065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  41 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 89  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 10571502 - 10571426
Alignment:
Q  208 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 284  Q
    |||||||| ||| |||||||||||| |||||||| || || ||| |||||||  |||| |||||||||  |||||||    
T  10571502 ctgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggtttt 10571426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 25377076 - 25377138
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaatt 428  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||    
T  25377076 tttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaatt 25377138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 18908877 - 18908828
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  18908877 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18908828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 18913625 - 18913576
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  18913625 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18913576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 18920833 - 18920784
Alignment:
Q  366 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  18920833 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18920784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 25376921 - 25376969
Alignment:
Q  211 ttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacac 259  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacac 25376969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 50645571 - 50645491
Alignment:
Q  348 gattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaatt 428  Q
    |||||| |||||||| | |||||||| |||   |||||||| |||||||||||||||||||||| ||| ||||||| ||||    
T  50645571 gattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaatt 50645491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  29 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 79  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  41 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 88  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 39379136 - 39379080
Alignment:
Q  359 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 415  Q
    |||||| ||| ||||||||  ||||||||| ||||| ||| ||||||||||||||||    
T  39379136 aactgattttattatatggcagatgaaggaatttggggttgaagagtcttggactca 39379080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 13407 - 13444
Alignment:
Q  381 atgaaggagtttggagttcaagagtcttggactcagtt 418  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13407 atgaaagagtttggagttcaagagtcttggactcagtt 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 4722 - 4682
Alignment:
Q  381 atgaaggagtttggagttcaagagtcttggactcagttatt 421  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  4722 atgaagaaatttggagttcaagagtcttggactcagttatt 4682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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