View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_20 (Length: 359)

Name: NF10118_low_20
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_20
NF10118_low_20
[»] chr3 (8 HSPs)
chr3 (19-227)||(52087502-52087712)
chr3 (276-347)||(52088138-52088209)
chr3 (156-222)||(11511300-11511366)
chr3 (156-222)||(55122135-55122201)
chr3 (156-220)||(41755056-41755120)
chr3 (159-213)||(11510222-11510276)
chr3 (177-222)||(50122383-50122428)
chr3 (162-222)||(55121581-55121641)
[»] chr6 (3 HSPs)
chr6 (122-224)||(19757887-19757993)
chr6 (177-216)||(5723058-5723097)
chr6 (177-213)||(25987139-25987175)
[»] chr7 (10 HSPs)
chr7 (156-222)||(46088963-46089029)
chr7 (112-213)||(31873857-31873960)
chr7 (156-218)||(46089676-46089738)
chr7 (156-213)||(46741412-46741469)
chr7 (122-213)||(4997298-4997393)
chr7 (122-213)||(19804633-19804727)
chr7 (122-213)||(31873344-31873438)
chr7 (142-222)||(47405451-47405533)
chr7 (122-222)||(35200787-35200891)
chr7 (113-157)||(38858016-38858061)
[»] chr5 (2 HSPs)
chr5 (122-222)||(9070420-9070523)
chr5 (113-222)||(18848039-18848151)
[»] chr2 (6 HSPs)
chr2 (112-220)||(16118977-16119088)
chr2 (124-222)||(16119119-16119220)
chr2 (156-213)||(33667747-33667804)
chr2 (156-213)||(33667877-33667934)
chr2 (140-213)||(43977555-43977631)
chr2 (177-213)||(16340580-16340616)
[»] scaffold0153 (2 HSPs)
scaffold0153 (156-222)||(17390-17456)
scaffold0153 (139-222)||(16854-16939)
[»] chr1 (7 HSPs)
chr1 (122-220)||(10974750-10974851)
chr1 (139-222)||(21263330-21263415)
chr1 (122-221)||(33205427-33205529)
chr1 (112-158)||(46341582-46341629)
chr1 (122-213)||(52427529-52427623)
chr1 (112-168)||(26354554-26354613)
chr1 (166-222)||(32160722-32160778)
[»] chr8 (1 HSPs)
chr8 (156-220)||(3642524-3642589)
[»] chr4 (1 HSPs)
chr4 (156-213)||(40900250-40900307)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 52087502 - 52087712
Alignment:
Q  19 tacacaggtgttgtgtgggagcgatgttctcacaatactttcttgttcttttctttattctcaccccnnnnnnntatgactagaaaaggtgcaagaaaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  52087502 tacacaggtgttgtgtgggagcgatgttctcacaatactttcttgttcttttctttattctcaccccaaaaaaatatgactagaaaaggtgcaagaaaat 52087601  T
Q  119 taatgttgacacatttgataggctgaaaaacatatgt--aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattg 216  Q
    ||| ||||||| |||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  52087602 taacgttgacatatttgataggctgaaaaacatatgtaaaagacgaaaataccccctcgacagttaactaccgaagtaatgaaccggctgcagttaagtg 52087701  T
Q  217 ccgaagaacac 227  Q
    |||||||||||    
T  52087702 ccgaagaacac 52087712  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 52088138 - 52088209
Alignment:
Q  276 tgcaaagattgctttagtactttagtgactaaatctcagacgttagcaagcataacaattcaacaaacttca 347  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52088138 tgcaaagattgctttagtgctttagtgactaaatctcagacgttagcaagcataacaattcaacaaacttca 52088209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 11511366 - 11511300
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  11511366 aagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgcagttaactaccgaag 11511300  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 55122201 - 55122135
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  55122201 aagacgaaaatgccccctcgacagttaactaccgaaataatgaaccggttgcagttaactcccgaag 55122135  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 41755120 - 41755056
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 220  Q
    |||||||||||  ||| ||| ||||||||||| ||| |||||||||||||||| |||| ||||||    
T  41755120 aagacgaaaatgtcccctcgacagttaactactgaaataatgaaccggctgcaattaactgccga 41755056  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 11510222 - 11510276
Alignment:
Q  159 acgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||| ||| ||| | ||||||||||||| ||||||||| |||||||||||    
T  11510222 acgaaaatatcccctcgacggttaactaccgaaataatgaaccagctgcagttaa 11510276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 50122383 - 50122428
Alignment:
Q  177 cagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||||||||||||| | | ||||||||||||||||| ||||||||    
T  50122383 cagttaactaccgaaattaagaaccggctgcagttaactgccgaag 50122428  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 55121581 - 55121641
Alignment:
Q  162 aaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||| |||| ||| ||||||||||||||| ||||||||||| ||| ||||| | ||||||    
T  55121581 aaaatgccccctcggcagttaactaccgaaataatgaaccggttgcggttaactaccgaag 55121641  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 19757993 - 19757887
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaa--catatgtaagacgaaaataccccttcgccagttaactaccgaagt-aatgaaccggctgcagttaattgc 217  Q
    ||||||||||| ||||||| ||||||||  |||||  ||||||||||||| ||| |  ||||||||||||||||| || ||||||||||||||||| |||    
T  19757993 tgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagttaaagaaccggctgcagttaactgc 19757894  T
Q  218 cgaagaa 224  Q
    |||||||    
T  19757893 cgaagaa 19757887  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 5723058 - 5723097
Alignment:
Q  177 cagttaactaccgaagtaatgaaccggctgcagttaattg 216  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  5723058 cagttaactatcgaaataatgaaccggctgcagttaattg 5723097  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 25987139 - 25987175
Alignment:
Q  177 cagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  25987139 cagttaactaccgaaataatgaactggctgcagttaa 25987175  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 46088963 - 46089029
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  46088963 aagacaaaaatgccccctcgccagttaactaccgaaataatgaaccggctgcagttaactcccgaag 46089029  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 31873960 - 31873857
Alignment:
Q  112 agaaaattaatgttgacacatttgatagg-ctgaaaa-acatatgtaagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 209  Q
    ||||||||  ||||||||||| ||||||| ||||||| |||| |  |||||||||||||| || || |||||||||||||| ||   |||||||||||||    
T  31873960 agaaaattgttgttgacacatatgatagggctgaaaacacatgtaaaagacgaaaatacctctacggcagttaactaccgatgtttggaaccggctgcag 31873861  T
Q  210 ttaa 213  Q
    ||||    
T  31873860 ttaa 31873857  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 46089738 - 46089676
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 218  Q
    ||||||||||| |||| ||| |||||||||||| || || |||||||||||||||||| ||||    
T  46089738 aagacgaaaatgccccctcggcagttaactaccaaaatagtgaaccggctgcagttaactgcc 46089676  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 46741469 - 46741412
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    |||||||||||  ||||||| || |||||||||||| ||||||| |||||||||||||    
T  46741469 aagacgaaaatgtcccttcgacaattaactaccgaaataatgaatcggctgcagttaa 46741412  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 4997298 - 4997393
Alignment:
Q  122 tgttgacacatttgataggct-gaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 213  Q
    |||| |||||| ||||||| | |||||||| ||||||  ||||||||||||||| || |||||||||||||||||  || |||||||| |||||||    
T  4997298 tgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttttgaaaccggctacagttaa 4997393  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 19804727 - 19804633
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||||| ||||||| |||||||||| ||||||  ||||||||| | | | || || ||||||||||||||   |||||||||||||||||    
T  19804727 tgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcagttaa 19804633  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 31873344 - 31873438
Alignment:
Q  122 tgttgacacatttgata-ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||||| ||||| |||||||||||| ||||||  || |||||| | ||| || |||||||||||||||||   |||||| ||||||||||    
T  31873344 tgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcagttaa 31873438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 47405533 - 47405451
Alignment:
Q  142 tgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||||||| ||||||  |||||||||  ||| ||| ||||||||||| ||| ||| ||||||||||||||||| | ||||||    
T  47405533 tgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaaccggctgcagttaactaccgaag 47405451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 35200891 - 35200787
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaa-ccggctgcagttaattgc 217  Q
    |||| |||||| ||||||| |||||||||| ||||||  || |||||| ||||| || |||||| ||||||||||  |||| |||||||||||||| | |    
T  35200891 tgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgcagttaactac 35200792  T
Q  218 cgaag 222  Q
    |||||    
T  35200791 cgaag 35200787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 38858061 - 38858016
Alignment:
Q  113 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaa 157  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||    
T  38858061 gaaaattgatgttgacacatttgatagggctgaaaaacacatgtaa 38858016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 9070523 - 9070420
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 218  Q
    ||||||||||| ||||||| |||||||| | ||||||  ||||||||||  ||| || ||||||||||||||||||| ||||| ||||||||||| | ||    
T  9070523 tgttgacacatatgataggactgaaaaatacatgtaaaagacgaaaatattcctgcggcagttaactaccgaagtaaggaaccagctgcagttaacttcc 9070424  T
Q  219 gaag 222  Q
    ||||    
T  9070423 gaag 9070420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 18848151 - 18848039
Alignment:
Q  113 gaaaattaatgttgacacatttgata-ggctgaaaaacatatgt--aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcag 209  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||  ||||||||||| ||||| |   | ||||||||||||||    ||||| ||||||    
T  18848151 gaaaattattgttgacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtaattaactaccgaagtttaaaaccgactgcag 18848052  T
Q  210 ttaattgccgaag 222  Q
    |||| | ||||||    
T  18848051 ttaactaccgaag 18848039  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 16118977 - 16119088
Alignment:
Q  112 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgca 208  Q
    ||||||||  ||||||||||| ||||||| |||||||||| ||||||  ||||||||| ||||| |  | |||||||||||||||||  ||||| |||||    
T  16118977 agaaaattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaagaaaccgactgca 16119076  T
Q  209 gttaattgccga 220  Q
    ||||| ||||||    
T  16119077 gttaactgccga 16119088  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 16119220 - 16119119
Alignment:
Q  124 ttgacacatttgatag-gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccga 220  Q
    ||||||||| |||||| ||| ||||||||||||||  ||||||||| ||| |    ||||| ||||||||||||| ||||||||||||||||| ||| ||    
T  16119220 ttgacacatatgatagagctaaaaaacatatgtaaaagacgaaaatgcccatgtagcagtttactaccgaagtaaagaaccggctgcagttaactgctga 16119121  T
Q  221 ag 222  Q
    ||    
T  16119120 ag 16119119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 33667747 - 33667804
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    |||| ||||||  ||| ||| ||||||||||||||| |||||||||||||||||||||    
T  33667747 aagatgaaaatctcccctcggcagttaactaccgaaataatgaaccggctgcagttaa 33667804  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 33667934 - 33667877
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||||| || | ||  ||||||||||||||| |||||||||||||||||||||    
T  33667934 aagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgcagttaa 33667877  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 43977555 - 43977631
Alignment:
Q  140 gctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatg-aaccggctgcagttaa 213  Q
    ||||||||||| ||||||  ||||||||| ||||| || ||| |||||||||||||  || ||||||||||||||||    
T  43977555 gctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgcagttaa 43977631  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 16340616 - 16340580
Alignment:
Q  177 cagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  16340616 cagttaactaccgaagtaaggaaccggttgcagttaa 16340580  T

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Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 17456 - 17390
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  17456 aagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcagttaactaccgaag 17390  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 16854 - 16939
Alignment:
Q  139 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    |||||||||||| ||||||  ||||||||| ||||| ||  ||||||||||||||||   ||||||| ||||||||| | ||||||    
T  16854 ggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagtttggaaccggttgcagttaactaccgaag 16939  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 10974851 - 10974750
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 218  Q
    ||||||||||| ||||||| |||||||||| || |||  ||||||||| || || || ||||||||||| ||||||| ||||||| ||||||||| ||||    
T  10974851 tgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaaccggttgcagttaactgcc 10974752  T
Q  219 ga 220  Q
    ||    
T  10974751 ga 10974750  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 21263330 - 21263415
Alignment:
Q  139 ggctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    |||||||||||| ||||||  || |||||||||||| || |||||||||||||||||   |||||| |||||||||||| ||||||    
T  21263330 ggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaattcccgaag 21263415  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 33205427 - 33205529
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgcc 218  Q
    |||| |||||| ||||||| |||||||||| ||||||  ||||||||| || || || |||||| ||||||||||   |||||||||| |||||| ||||    
T  33205427 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtagttaactgcc 33205526  T
Q  219 gaa 221  Q
    |||    
T  33205527 gaa 33205529  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 46341582 - 46341629
Alignment:
Q  112 agaaaattaatgttgacacatttgata-ggctgaaaaacatatgtaag 158  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  46341582 agaaaattgatgttgacacatttgatagggctgaaaaacgtatgtaag 46341629  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 52427623 - 52427529
Alignment:
Q  122 tgttgacacatttgatagg-ctgaaaaacatatgtaa--gacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    |||||||| || ||||||| |||||||||| ||||||  ||||||||| || || |  |||||||||||||||||   |||||||||||||||||    
T  52427623 tgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagttaa 52427529  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 26354613 - 26354554
Alignment:
Q  112 agaaaattaatgttgacacatttgatagg-ctgaaaaacatatgt--aagacgaaaatac 168  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||  |||||||||||||    
T  26354613 agaaaattgatgttgactcatatgatagggctgaaaaacatatgtaaaagacgaaaatac 26354554  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 32160722 - 32160778
Alignment:
Q  166 taccccttcgccagttaactaccgaagtaatgaaccggctgcagttaattgccgaag 222  Q
    ||||||| || |||||||||||||||||   ||||||||||||||||| | ||||||    
T  32160722 tacccctgcggcagttaactaccgaagtttggaaccggctgcagttaacttccgaag 32160778  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 3642589 - 3642524
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaag-taatgaaccggctgcagttaattgccga 220  Q
    ||||||||||||||| | || |||||||||| ||||| ||| ||||||| ||||||||| ||||||    
T  3642589 aagacgaaaatacccatgcggcagttaactatcgaagttaaagaaccggttgcagttaactgccga 3642524  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 40900250 - 40900307
Alignment:
Q  156 aagacgaaaataccccttcgccagttaactaccgaagtaatgaaccggctgcagttaa 213  Q
    ||||||||||| |||| ||| |||||||||| |||| |||| |||||||| |||||||    
T  40900250 aagacgaaaatgccccatcggcagttaactatcgaaataataaaccggctacagttaa 40900307  T

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