View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10118_low_21 (Length: 352)
Name: NF10118_low_21
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 13881918 - 13882233
Alignment:
| Q |
18 |
aaaaccaattaaggttttgaaagtcagaagggagtgaatgtctagtaagaacataaatggggtacatgctttgccaatggcttcacgtttagaaaatggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13881918 |
aaaaccaattaaggttttgaaagtcagaagggagtgaatgtctagtaagaacataaatggggtacatgctttgccaatggcttcacgtttagaaaatggc |
13882017 |
T |
|
| Q |
118 |
aatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgcttctgcatcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13882018 |
aatgacgttccatctccttcaacttcatgcgcattatccattttcatcagcttcaccttcactttcagccttattatcatg---------ttctgcatcc |
13882108 |
T |
|
| Q |
218 |
tcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13882109 |
tcgcaccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatc |
13882208 |
T |
|
| Q |
318 |
agcatccatgtagttttctcctctg |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13882209 |
agcatccatgtagttttctcctctg |
13882233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 311
Target Start/End: Original strand, 13883806 - 13884011
Alignment:
| Q |
110 |
aaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgctt |
209 |
Q |
| |
|
||||||||||| || |||||||| ||||||| |||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
13883806 |
aaaatggcaataactttccatcttcttcaacatcatgcgcatcagccatcg-cttcagcttcacctccactttcagccttattatcatgttctccttcaa |
13883904 |
T |
|
| Q |
210 |
ctgcatcctcgcac-----catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttctt |
304 |
Q |
| |
|
| ||| || | |||||| ||||| |||||||||||||||| |||||||||||| ||||| || |||||| |||||||||||||||| |||| |
|
|
| T |
13883905 |
catcatgttctccatcagtcatcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctctt |
13884004 |
T |
|
| Q |
305 |
ccccttc |
311 |
Q |
| |
|
||||||| |
|
|
| T |
13884005 |
ccccttc |
13884011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 323
Target Start/End: Original strand, 16024464 - 16024696
Alignment:
| Q |
103 |
cgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
202 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16024464 |
cgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattc-cttcagcttcaccttcactttcagccttatcatcatgttct |
16024562 |
T |
|
| Q |
203 |
gc-------tgct--tct-----gca-tcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatga |
287 |
Q |
| |
|
| |||| ||| ||| ||||| | ||||| ||||| ||||||||||||||| | ||| |||||| ||||| ||| |||| |||| |
|
|
| T |
16024563 |
ccatcatcatgctcttcttgagagcactcctctc--catcagcagattcacttccagaaacatcaacgtttccagaagcgttttcactgccctctgatga |
16024660 |
T |
|
| Q |
288 |
cctctgaggactttcttccccttcatcatcagcatc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16024661 |
cctctgaggactttcttccccttcatcatcagcatc |
16024696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 14397598 - 14397503
Alignment:
| Q |
221 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcat |
316 |
Q |
| |
|
|||||| | |||||| ||||| |||||| || ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcat |
14397503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 14393221 - 14393132
Alignment:
| Q |
108 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | | |||| | |||| | | ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14393221 |
agaaaatggcaatgacattccatctccttcaac---aggggcattagccatcat--ttagcttcaccttcactttcagccttactatcacgttct |
14393132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 14391312 - 14391216
Alignment:
| Q |
221 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcat |
316 |
Q |
| |
|
|||||||| |||||| | |||||||||||| | |||||| |||| ||||| ||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
14391312 |
caccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat |
14391216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 14393043 - 14393011
Alignment:
| Q |
288 |
cctctgaggactttcttccccttcatcatcagc |
320 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
14393043 |
cctccgaggactttcttccccttcatcatcagc |
14393011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University