View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_27 (Length: 290)
Name: NF10118_low_27
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 13135253 - 13135542
Alignment:
| Q |
1 |
ctaagacaaaaggatgaacaaatagcgcaagcgacaaagaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcgga |
100 |
Q |
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| T |
13135253 |
ctaagacaaaaggatgaacaaatagcacaagcgacaaagaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcgga |
13135352 |
T |
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| Q |
101 |
gagcttctcgggaaaatgaagctatggtgttgtccctcaataacgccttagaacaaatcaaagaaagaacattggctatagaagaagtagagtcatgttg |
200 |
Q |
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| T |
13135353 |
gagcttctcgggaaaatgaagctatggtgttgtccctcaataacgccttagaacaaatcaaagaaagaacattggctatagaagaagtagagtcatgttg |
13135452 |
T |
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| Q |
201 |
tgacatgaaaaatcatgaagaagaaacatgggaaaacacaagtctaaacacaatttgcaaatgttgttattcacaagagtcatcttttat |
290 |
Q |
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| T |
13135453 |
tgacatgaaaaatcatgaagaagaaacatgggaaaacacaagtctaaacacaatttgcaaatgttgttattcacaagagtcatcttttat |
13135542 |
T |
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Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 55208785 - 55208990
Alignment:
| Q |
1 |
ctaagacaaaaggatgaacaaatagcgcaagcgacaaagaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcgga |
100 |
Q |
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||||||||||||||||||||||| || |||||||| ||||||||| ||||| |||||||||| |||| |||||||| ||||| |||||| ||||||| |
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| T |
55208785 |
ctaagacaaaaggatgaacaaattgcacaagcgacgaagaaaaggatggagttggaacaatttttgacaagactagagacagagaatcaatcatggcgga |
55208884 |
T |
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| Q |
101 |
gagcttctcgggaaaatgaagctatggtgttgtccctcaataacgccttagaacaaatcaaagaa---agaacattggctatagaagaagtagagtcatg |
197 |
Q |
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| T |
55208885 |
gagctgcacatgaaaatgaagctatggtgttatcgctcaataacgccttagaatctatcaaagaaattagagcattggtagtagaagatgtagagtcatg |
55208984 |
T |
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| Q |
198 |
ttgtga |
203 |
Q |
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|||||| |
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| T |
55208985 |
ttgtga |
55208990 |
T |
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