View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_28 (Length: 283)
Name: NF10118_low_28
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 24616714 - 24616889
Alignment:
| Q |
19 |
atcacttgttctccttcgttttgtttttatgcaccaagaaacctagaaaatttctatttcataccccaaaggcacacttaaccggatttatctttaatca |
118 |
Q |
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| T |
24616714 |
atcacttgttctccttcgttttgtttttatgcaccaagaaacctaaaaaatttctatttcataccccaaagacacactttaccggatttatctttaatca |
24616813 |
T |
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| Q |
119 |
ttaaaaatcattatttttaaggctttctatagttctagcaaatgacaatggaagtctttgtattttaccacgatat |
194 |
Q |
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| T |
24616814 |
ttaaaaatcattatttttaaggctttctatagttctagcaaatgacaatggaagtctttgtattttaccacgatat |
24616889 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 24616928 - 24617015
Alignment:
| Q |
190 |
gatatgagactccatcattcttgagctagaacgacataacaatccatttc----atatattccaagtgcaccaaccgaacttcctttg |
273 |
Q |
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| T |
24616928 |
gatatgagactccatcattcttgagcttgaacgacataacaatccatttcatatatatattccaagtacaccaactgaacttcctttg |
24617015 |
T |
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