View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_29 (Length: 282)

Name: NF10118_low_29
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_29
NF10118_low_29
[»] chr7 (7 HSPs)
chr7 (158-260)||(34206385-34206487)
chr7 (158-257)||(4164097-4164196)
chr7 (114-261)||(45459486-45459633)
chr7 (114-160)||(4164212-4164258)
chr7 (114-160)||(34206503-34206549)
chr7 (158-260)||(45845329-45845431)
chr7 (222-260)||(43108951-43108989)
[»] chr6 (7 HSPs)
chr6 (158-260)||(16467474-16467576)
chr6 (158-257)||(1308650-1308749)
chr6 (158-259)||(26711288-26711389)
chr6 (163-261)||(5874597-5874695)
chr6 (153-257)||(3489836-3489940)
chr6 (114-160)||(1308588-1308634)
chr6 (114-157)||(26711408-26711451)
[»] chr3 (7 HSPs)
chr3 (158-260)||(16896558-16896660)
chr3 (158-260)||(19233120-19233222)
chr3 (158-259)||(30936642-30936743)
chr3 (158-259)||(11584118-11584219)
chr3 (114-160)||(16896496-16896542)
chr3 (114-152)||(11584243-11584281)
chr3 (114-160)||(19233238-19233284)
[»] chr4 (9 HSPs)
chr4 (158-258)||(38947860-38947960)
chr4 (158-260)||(53679096-53679198)
chr4 (158-261)||(19837189-19837292)
chr4 (158-260)||(43469880-43469982)
chr4 (158-257)||(19309570-19309669)
chr4 (114-160)||(38947798-38947844)
chr4 (114-160)||(53679034-53679080)
chr4 (158-258)||(17995585-17995685)
chr4 (159-195)||(21479773-21479809)
[»] chr2 (9 HSPs)
chr2 (162-260)||(79830-79928)
chr2 (158-260)||(44940285-44940387)
chr2 (1-59)||(41231826-41231884)
chr2 (204-260)||(3153267-3153323)
chr2 (110-160)||(44940403-44940453)
chr2 (158-261)||(14164447-14164550)
chr2 (158-194)||(17931210-17931246)
chr2 (158-258)||(20635113-20635213)
chr2 (158-198)||(27336616-27336656)
[»] chr1 (2 HSPs)
chr1 (162-260)||(10385899-10385998)
chr1 (158-194)||(39496261-39496297)
[»] chr5 (3 HSPs)
chr5 (161-257)||(842041-842137)
chr5 (158-257)||(2681799-2681898)
chr5 (158-260)||(16421664-16421766)
[»] chr8 (3 HSPs)
chr8 (158-257)||(41691743-41691842)
chr8 (218-260)||(13404137-13404179)
chr8 (158-194)||(33989032-33989068)
[»] scaffold0674 (1 HSPs)
scaffold0674 (158-258)||(2327-2427)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 34206487 - 34206385
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  34206487 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctctgaaagtctctatttg 34206388  T
Q  258 cgc 260  Q
    |||    
T  34206387 cgc 34206385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 4164196 - 4164097
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  4164196 gtggtgtgtatcaaatgctcatgcggcaggagaggcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctctgaaagtctctatttg 4164097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 45459633 - 45459486
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcg 213  Q
    |||||| ||||||  ||| || ||||||||||| || |||||||||| |||| |||||||||||||||||||| ||||||||||  |  ||||  |||||    
T  45459633 gcaggaaactgaaccagaagtctggctttggcgacctaatattggtgatgtggatcaaatgctcatgcggcaggagatgcacaaccacaacgtcatttcg 45459534  T
Q  214 gatgctccgtggcataagagtgctcctttgaaagtttctatttgcgct 261  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  45459533 gatgctccttggcataagagtgttcctttgaaagtttatatttgcgct 45459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 4164258 - 4164212
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  4164258 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 4164212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 34206549 - 34206503
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  34206549 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 34206503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 45845329 - 45845431
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||| ||||||||||||||||| | ||| |||||||| ||  ||||||||||||||  || || ||||||||  ||| ||||| |||||| |||||| |    
T  45845329 gtggtatgtatcaaatgctcatgagacaggagatgcacgatcgtgacgttgtttcggtggcaccttggcataaaggtgttccttagaaagtctctattag 45845428  T
Q  258 cgc 260  Q
    |||    
T  45845429 cgc 45845431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 43108951 - 43108989
Alignment:
Q  222 gtggcataagagtgctcctttgaaagtttctatttgcgc 260  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  43108951 gtggcataagagtgctcctctgaaagtctctatttgcgc 43108989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 16467576 - 16467474
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16467576 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaaatatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 16467477  T
Q  258 cgc 260  Q
    |||    
T  16467476 cgc 16467474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 1308650 - 1308749
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1308650 gtggtgtatatcaaatgctcttgcggcaggagatgcacagttatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 1308749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 26711389 - 26711288
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||    
T  26711389 gtggtgtgtatcaaatgctcatgcggtaggagatgcacaactatgacgttgtttcgaatgctttgtggcataagagtgctcctttgaaagtctctatttg 26711290  T
Q  258 cg 259  Q
    ||    
T  26711289 cg 26711288  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 5874597 - 5874695
Alignment:
Q  163 gtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgct 261  Q
    |||| ||||||||||||||||||| ||||||||||  |||| || |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  5874597 gtgtgtcaaatgctcatgcggcaggagatgcacaaccatgatgtcgtttcggatgctccttggcataagagtgttcccttgaaagtttctatttgcgct 5874695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 3489836 - 3489940
Alignment:
Q  153 tattggtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttct 252  Q
    |||| ||||||||||||||||||||||||| ||  ||||||| ||  | ||  | |||||||||||||| | ||| ||||||| |||||| ||||| |||    
T  3489836 tattagtggtgtgtatcaaatgctcatgcgacaagagatgcataaccacgatatcgtttcggatgctccttagcacaagagtgttcctttaaaagtctct 3489935  T
Q  253 atttg 257  Q
    |||||    
T  3489936 atttg 3489940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 1308588 - 1308634
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||    
T  1308588 gcaggatactgaatcagatgtttgactttggcggcccaacattggtg 1308634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 26711451 - 26711408
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattg 157  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||    
T  26711451 gcaggatactgaattagatgtctggctttggcggcccaacattg 26711408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 16896558 - 16896660
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16896558 gtggtgtgtatcaaatgctcatgcggcaggagatacacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 16896657  T
Q  258 cgc 260  Q
    |||    
T  16896658 cgc 16896660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 19233222 - 19233120
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19233222 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaactatgatgttggttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 19233123  T
Q  258 cgc 260  Q
    |||    
T  19233122 cgc 19233120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 30936642 - 30936743
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||    
T  30936642 gtggtgtgtatcaaatgctcatgcggcaagagatgcacaattatgacgttgtttcgaatgctccgtggcataagagtgctcctctaaaagtctctatttg 30936741  T
Q  258 cg 259  Q
    ||    
T  30936742 cg 30936743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 11584219 - 11584118
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||| ||| ||| |||| |||||  | ||||| ||||||||| |||| ||||||| |||||||||||||||||||| ||||||    
T  11584219 gtggtgtgtatcaaatgctcacgcgacaggagattcacaaccacgacgtcgtttcggattctccttggcataggagtgctcctttgaaagtttttatttg 11584120  T
Q  258 cg 259  Q
    ||    
T  11584119 cg 11584118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 16896496 - 16896542
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  16896496 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 16896542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 11584281 - 11584243
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaa 152  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11584281 gcaggatactgaattagatgtttggctttggcggcccaa 11584243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 19233284 - 19233238
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  19233284 gcaggatactgaatcagatgtctggctttggcggcccaacattggtg 19233238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 38947860 - 38947960
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  38947860 gtggtgtgtatcaaatgctcatgcggcaggagatgcacaattatgacgttgtttcggatgctccgtggtataagagtgctcctttgaaagtctctatttg 38947959  T
Q  258 c 258  Q
    |    
T  38947960 c 38947960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 53679096 - 53679198
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  53679096 gtggtgtgtatcaaatgctcttgcggcaggagatgcacaactatgacgttgtctcggatgctccgtggcataagagtgctccgttgaaagtctctatttg 53679195  T
Q  258 cgc 260  Q
    |||    
T  53679196 cgc 53679198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 19837292 - 19837189
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| || |||||||  | ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  19837292 gtggtgtgtatcaaatgctcatgcggcaggaggtgcacaaccacgacgtcgtttcggatgctccttggcataagagtgttcctttgaaagtttctatttg 19837193  T
Q  258 cgct 261  Q
    ||||    
T  19837192 cgct 19837189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 43469880 - 43469982
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    |||||||||||||||||||| || |||||||||| || ||  | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  43469880 gtggtgtgtatcaaatgctcgtgtggcagaagatacataaccacgacgttgtttcggatgctccttggcataagagtgttcctttgaaagtttctatttg 43469979  T
Q  258 cgc 260  Q
    |||    
T  43469980 cgc 43469982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 19309570 - 19309669
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||  ||||||||||  | ||  | |||||||||||||| ||||| ||||||| |||||||||||| ||||||||    
T  19309570 gtggtgtgtatcaaatgctcatgcggcaagagatgcacaaccacgatatcgtttcggatgctccttggcacaagagtgttcctttgaaagtctctatttg 19309669  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 38947798 - 38947844
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  38947798 gcaggatactgaatcagatgtttggctttggcggcccaacattggtg 38947844  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 53679034 - 53679080
Alignment:
Q  114 gcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  53679034 gcaggatactgaatcagatgtctggctttggcggcccaacattggtg 53679080  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 17995685 - 17995585
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||| ||| || || |||| ||| || |||| || |||||||| |  || || ||| | |||| |||||||||||| ||||||||    
T  17995685 gtggtgtgtatcaaatgcttatgaggaaggagatacacgatcatgatgtcgtttcggaggtgccttgacattaaagtgttcctttgaaagtctctatttg 17995586  T
Q  258 c 258  Q
    |    
T  17995585 c 17995585  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 21479809 - 21479773
Alignment:
Q  159 tggtgtgtatcaaatgctcatgcggcagaagatgcac 195  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  21479809 tggtgtgtatcaaatgctcatgaggcaggagatgcac 21479773  T

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Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 79928 - 79830
Alignment:
Q  162 tgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgc 260  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  79928 tgtgtatcaaatgctcatgcggcaggagatgcataattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttgcgc 79830  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 44940387 - 44940285
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44940387 gtggtatgtatcaaatgctcatgcggcaggagatgcacaattatgacattgtttcggatgctccgtggcataagagtgctcctttgaaagtctctatttg 44940288  T
Q  258 cgc 260  Q
    |||    
T  44940287 cgc 44940285  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41231884 - 41231826
Alignment:
Q  1 ctatgttgtagattattgaagaatctagctgaaattaccaggcatgtaactatgcaaat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41231884 ctatgttgtagattattgaagaatctagctgaaattaccaggcatgtaactatgaaaat 41231826  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 3153267 - 3153323
Alignment:
Q  204 cgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgc 260  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  3153267 cgttgtttcggatgctccgtggcataagagtgctcctctgaaagtctctatttgcgc 3153323  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 44940453 - 44940403
Alignment:
Q  110 tcccgcaggatactgaatgagatgtttggctttggcggcccaatattggtg 160  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  44940453 tcccgcaggatactgaatcagatgtttggctttggcggcccaacattggtg 44940403  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 14164550 - 14164447
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||| ||||| ||| ||||| |||| ||||  ||||| ||   | |||||||||| ||||||||||||| |||||||||||| ||||| ||    
T  14164550 gtggtgtgtatcatatgcttatgaggcaggagatacacagctatgatgtcactgcggatgctccttggcataagagtgttcctttgaaagtgtctatctg 14164451  T
Q  258 cgct 261  Q
    ||||    
T  14164450 cgct 14164447  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 17931246 - 17931210
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgca 194  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17931246 gtggtgtgtatcaaatgctcatgcggcaggagatgca 17931210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 20635213 - 20635113
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||| ||| || || |||| ||| || |||| || |||||||| |  || || ||| | |||| |||||||||||| ||||||||    
T  20635213 gtggtgtgtatcaaatgcttatgaggaaggagatacacgatcatgatgtcgtttcggaggtgccttgacattaaagtgttcctttgaaagtctctatttg 20635114  T
Q  258 c 258  Q
    |    
T  20635113 c 20635113  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 27336616 - 27336656
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaat 198  Q
    |||||||||||||||||||||||| |||| ||||| |||||    
T  27336616 gtggtgtgtatcaaatgctcatgcagcaggagatgtacaat 27336656  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 10385899 - 10385998
Alignment:
Q  162 tgtgtatcaaatgctca-tgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttgcgc 260  Q
    ||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10385899 tgtgtatcaaatgctccgtgcggcaggagaggcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctctgaaagtttctatttgcgc 10385998  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 39496297 - 39496261
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgca 194  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39496297 gtggtgtgtatcaaatgctcatgcagcaggagatgca 39496261  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 842137 - 842041
Alignment:
Q  161 gtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    |||||||||||||||||||||| ||| ||||||| ||  | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  842137 gtgtgtatcaaatgctcatgcgacaggagatgcataaccacgacgtcgtttcggatgctccttggcataagagtgctcctttgaaagtttctatttg 842041  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 2681898 - 2681799
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||| |||||||| |||||||||||||||| ||||||  ||||||||||    
T  2681898 gtggtgtgtatcaaatgctcatgcggcaggagatgcataaccatgacgttgtttcagatgctccttggcataagagtgctcatttgaagatttctatttg 2681799  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 16421664 - 16421766
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    |||||||||||||||||||||||  |||| |||| |||||||| |||||||||||||| || || |||| ||| |||| |  ||||||||||  ||||||    
T  16421664 gtggtgtgtatcaaatgctcatgaagcaggagatacacaattacgacgttgtttcggaggcaccttggcttaaaagtgtttttttgaaagttcttatttg 16421763  T
Q  258 cgc 260  Q
    |||    
T  16421764 cgc 16421766  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 41691743 - 41691842
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||||||| || |  |||| |||||| ||||  | |||||||||||||| |||||||||| || |||||||||||||||||||||    
T  41691743 gtggtgtgtatcaaatgctcatgaggtaagagatacacaatcatgatatcgtttcggatgctccttggcataagaatgttcctttgaaagtttctatttg 41691842  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 13404179 - 13404137
Alignment:
Q  218 ctccgtggcataagagtgctcctttgaaagtttctatttgcgc 260  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  13404179 ctccgtggcataagagtgctcctttgaaaatctctatttgcgc 13404137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 33989032 - 33989068
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgca 194  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  33989032 gtggtgtgtatcaaatgctcatgaggcaggagatgca 33989068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 2327 - 2427
Alignment:
Q  158 gtggtgtgtatcaaatgctcatgcggcagaagatgcacaattatgacgttgtttcggatgctccgtggcataagagtgctcctttgaaagtttctatttg 257  Q
    ||||||||||||||||||| ||| || || |||| ||| || |||| || |||||||| |  || || ||| | |||| |||||||||||| ||||||||    
T  2327 gtggtgtgtatcaaatgcttatgaggaaggagatacacgatcatgatgtcgtttcggaggtgccttgacattaaagtgttcctttgaaagtctctatttg 2426  T
Q  258 c 258  Q
    |    
T  2427 c 2427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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