View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_3 (Length: 661)

Name: NF10118_low_3
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_3
NF10118_low_3
[»] chr2 (1 HSPs)
chr2 (4-645)||(42960256-42960901)
[»] chr5 (2 HSPs)
chr5 (440-606)||(35607889-35608055)
chr5 (363-520)||(8309412-8309561)
[»] chr8 (3 HSPs)
chr8 (11-144)||(5504339-5504472)
chr8 (450-527)||(11791979-11792056)
chr8 (450-515)||(29858345-29858410)
[»] chr6 (5 HSPs)
chr6 (450-517)||(7712361-7712428)
chr6 (365-421)||(29246407-29246463)
chr6 (454-516)||(10890479-10890538)
chr6 (442-504)||(473905-473967)
chr6 (451-516)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (442-515)||(3182435-3182508)
chr7 (458-517)||(37702076-37702135)
[»] chr3 (3 HSPs)
chr3 (450-526)||(13873370-13873445)
chr3 (463-516)||(32783461-32783514)
chr3 (365-421)||(20668294-20668350)
[»] chr4 (2 HSPs)
chr4 (458-517)||(56081265-56081324)
chr4 (365-422)||(40829662-40829719)
[»] chr1 (2 HSPs)
chr1 (471-526)||(2443403-2443458)
chr1 (365-421)||(52910094-52910150)


Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 4 - 645
Target Start/End: Original strand, 42960256 - 42960901
Alignment:
Q  4 gatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatcaatttgagatcacctgttgaccatggatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960256 gatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatcaatttgagatcacctgttgaccatggatt 42960355  T
Q  104 agcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttcttcacaaaagctttaatggattctgctgatctttgttta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960356 agcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttcttcacaaaagctttaatggattctgctgatctttgttta 42960455  T
Q  204 ggtgggattgttgagagctgcccaatctggtttatcatgaaaggaaaaatcacttctatgcatgttacttgttagtttctattttactattcaatgctcg 303  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42960456 ggtgggattgttgagagctgcccaatctggtttatcatgaaatgaaaaattacttctatgcatattacttgttagtttctattttactattcaatgctcg 42960555  T
Q  304 tatagacattgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgcggttaattgtgttcggtgaatggttaaagagttgcgaca 403  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  42960556 tatagacgttgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgtggttaattgtgttcggtaaatggttaatgagttgcgaca 42960655  T
Q  404 tcttgtaatattcattaattaacc----atatactaaacttgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgaca 499  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960656 tcttgtaatattcattaattaaccatatatatactaaacttgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgaca 42960755  T
Q  500 aatttttgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtct 599  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960756 aatttgtgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtct 42960855  T
Q  600 gtccaaatccacagctagcttcaatatacacacccttattggtaat 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42960856 gtccaaatccacagctagcttcaatatacacacccttattggtaat 42960901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 440 - 606
Target Start/End: Complemental strand, 35608055 - 35607889
Alignment:
Q  440 tgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactcaaattaggtgatg 539  Q
    |||||| | |||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||| ||||| ||||| | | ||||||||||||||||||    
T  35608055 tgattaactgcatatttgaactatgttaaccatctaatttgttctagaaatttaatgtcaattttgtgtgtgaaaattaaacaactcaaattaggtgatg 35607956  T
Q  540 agtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaa 606  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  35607955 agtgaagacatatctcagctgacaacaaaccatggtggcaatgaatgctgtcattggtctgtccaaa 35607889  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 520
Target Start/End: Complemental strand, 8309561 - 8309412
Alignment:
Q  363 gcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaattaaccatatactaaacttgattagccgcatatttgaacta 462  Q
    ||||||||||||| ||||||||||||||  ||||||||| |||||||  |||||||||||    ||| || |  || | |||| || |||| ||||| |     
T  8309561 gcggttaattgtgctcggtgaatggttagtgagttgcgatatcttgt--tattcattaat----catctattggacataattaaccacataattgaattt 8309468  T
Q  463 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataaca 520  Q
    ||||||||||||| |||| ||| ||||||| ||| ||||  |||||||||||||||||    
T  8309467 tgttaaccatctattttgctgttgaaatttgatgtcaaa--tttgtgtcaaaataaca 8309412  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 5504472 - 5504339
Alignment:
Q  11 atcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatccacatttgtgttgatcaatttgagatcacctgttgaccatggattagcaact 110  Q
    |||||| || ||||||||||||||||||||||||||||| || |||| |||||| ||||||| ||| ||||| ||||||  |||||| | | |  |||||    
T  5504472 atcgtatggatgactgaagtagttgaaggtaacagcaggattttcattcacattggtgttgaccaacttgagctcacctactgaccaagcactgccaact 5504373  T
Q  111 tttgataagatgaatcctcccttaaatgcttcaa 144  Q
    || || ||||  || |||||||| ||||||||||    
T  5504372 ttggacaagacaaagcctcccttgaatgcttcaa 5504339  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 527
Target Start/End: Complemental strand, 11792056 - 11791979
Alignment:
Q  450 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactca 527  Q
    ||||| |||| | |||||||| ||||||||||||||||||||| ||| |||||| || ||||||||| ||| ||||||    
T  11792056 catatgtgaattgtgttaaccgtctaatttgttgtcgaaatttgatgtcaaattcttatgtcaaaatcacacaactca 11791979  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 515
Target Start/End: Complemental strand, 29858410 - 29858345
Alignment:
Q  450 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 515  Q
    |||||||||| |||||||||| ||||| |||  |||||||||| ||| ||||||||||| ||||||    
T  29858410 catatttgaattatgttaaccttctaaattgacgtcgaaatttgatgtcaaatttttgtttcaaaa 29858345  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 517
Target Start/End: Original strand, 7712361 - 7712428
Alignment:
Q  450 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 517  Q
    |||||||||||||||||||||||||||  ||||||||||||||  |  ||||||  ||||||||||||    
T  7712361 catatttgaactatgttaaccatctaaactgttgtcgaaatttgttatcaaattcgtgtgtcaaaata 7712428  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 29246407 - 29246463
Alignment:
Q  365 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa 421  Q
    |||||||| ||||| ||| |||||||| ||||||||||| ||||| |||||||||||    
T  29246407 ggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaa 29246463  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 516
Target Start/End: Original strand, 10890479 - 10890538
Alignment:
Q  454 tttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 516  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| ||||  |||||||||||||    
T  10890479 tttgaactctgttaaccatctagtttgttgtcgaaa-ttaatgtcaaa--tttgtgtcaaaat 10890538  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 473905 - 473967
Alignment:
Q  442 attagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaattt 504  Q
    ||||||| ||||| | ||||||||||| |||||||||||| || ||||||| ||| |||||||    
T  473905 attagccacatatgtaaactatgttaatcatctaatttgtggttgaaatttcatgtcaaattt 473967  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 12117149 - 12117214
Alignment:
Q  451 atatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 516  Q
    ||||||||||||  |||||||| ||| ||||||| ||| ||| ||| ||||||| |||||||||||    
T  12117149 atatttgaactacattaaccatataaattgttgttgaagtttgatgtcaaatttgtgtgtcaaaat 12117214  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 515
Target Start/End: Complemental strand, 3182508 - 3182435
Alignment:
Q  442 attagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 515  Q
    ||||||| ||||||| |||||  |||||||||||| | |||||||||||||  || ||||||||||| ||||||    
T  3182508 attagccacatattttaactaccttaaccatctaaatagttgtcgaaatttgttgtcaaatttttgtatcaaaa 3182435  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 37702076 - 37702135
Alignment:
Q  458 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 517  Q
    |||||| | ||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||    
T  37702076 aactatatcaactatctaatttgttgttgaaatttgatgacaaatttgtgtttcaaaata 37702135  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 13873445 - 13873370
Alignment:
Q  450 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 526  Q
    ||||||| |||||||||||| || || ||| |||||||| ||||||| | ||||||||||||||| ||||| |||||    
T  13873445 catatttaaactatgttaacaatttagttttttgtcgaattttaatgtc-aatttttgtgtcaaagtaacacaactc 13873370  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 32783461 - 32783514
Alignment:
Q  463 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 516  Q
    |||||||| ||||||||||||| ||||||| | | ||||||| |||||||||||    
T  32783461 tgttaaccgtctaatttgttgttgaaatttgaagtcaaatttgtgtgtcaaaat 32783514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 20668294 - 20668350
Alignment:
Q  365 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa 421  Q
    ||||||||||| ||  | ||||||||| ||||||||||| ||||| |||||||||||    
T  20668294 ggttaattgtgatcattaaatggttaatgagttgcgacaccttgtcatattcattaa 20668350  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 56081265 - 56081324
Alignment:
Q  458 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 517  Q
    |||| |||||| ||||||| |||||||| || ||| ||| ||||||||||||||||||||    
T  56081265 aactgtgttaatcatctaaattgttgtcaaatttttatgtcaaatttttgtgtcaaaata 56081324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 40829662 - 40829719
Alignment:
Q  365 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat 422  Q
    ||||||||||| || ||| |||||||| ||||||| ||| ||||| ||||||||||||    
T  40829662 ggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaat 40829719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 2443458 - 2443403
Alignment:
Q  471 atctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 526  Q
    |||||||||| ||||||||||| |||   ||||||||||||||||||||| |||||    
T  2443458 atctaatttggtgtcgaaatttgatgttgaatttttgtgtcaaaataacacaactc 2443403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 52910094 - 52910150
Alignment:
Q  365 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa 421  Q
    |||||||| | ||| ||| |||| ||| |||||| ||||||||||||||||||||||    
T  52910094 ggttaattatattctgtggatggataaggagttgtgacatcttgtaatattcattaa 52910150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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