View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_30 (Length: 281)
Name: NF10118_low_30
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 45804280 - 45804418
Alignment:
| Q |
135 |
atttacataagctctctcatacaaaaacctgtccaatatcttccccaacatgttgagtatcaatagctccagcaacttccattcctctggcctttgtcac |
234 |
Q |
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| T |
45804280 |
atttacataagctctctcatacaaaaacctgtccaatatcttccccaacatgttgagtatcaatagctccagcaacttccattcctctggcctttgtcac |
45804379 |
T |
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| Q |
235 |
agccaatactgctgctcttcctatttcctttgcttctcc |
273 |
Q |
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| T |
45804380 |
agctaatactgctgctcttcctatttcctttgctgctcc |
45804418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45804146 - 45804181
Alignment:
| Q |
1 |
gtatttcaagaggctcatccatgccacaaagctatg |
36 |
Q |
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| T |
45804146 |
gtatttcaagaggctcatccatgccacaaagctatg |
45804181 |
T |
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