View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_34 (Length: 254)

Name: NF10118_low_34
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_34
NF10118_low_34
[»] chr4 (1 HSPs)
chr4 (15-254)||(56044149-56044388)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 56044388 - 56044149
Alignment:
Q  15 caaagggttattgaagtaaataagtctgtaccaattgaataaaacgtaatatggaagaaaaggggaaaagaatgaacctaaagagagagacttgtgcaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56044388 caaagggttattgaagtaaataagtctgtaccaattgaataaaacgtaatatggaagaaaaggggaaaagaatgaacctaaagagagagacttgtgcaag 56044289  T
Q  115 gtttgatggccaccacatttcaacagggtccaccagatacctcctcagaatcccagcccatccatagcccaatatctgcaactcaatttacaacattaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56044288 gtttgatggccaccacatttcaacagggtccaccagatacctcctcagaatcccagcccatccatagcccaatatctgcaactcaatttacaacattaaa 56044189  T
Q  215 ttaaaatgaaattttagttaacaactatttaaagcagatt 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  56044188 ttaaaatgaaattttagttaacaactatttaaagcagatt 56044149  T

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