View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_35 (Length: 253)

Name: NF10118_low_35
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_35
NF10118_low_35
[»] chr4 (5 HSPs)
chr4 (145-213)||(9601726-9601794)
chr4 (154-213)||(9592972-9593031)
chr4 (92-146)||(9601824-9601878)
chr4 (20-59)||(9580998-9581037)
chr4 (20-59)||(9586693-9586732)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 9601794 - 9601726
Alignment:
Q  145 tccccacaaactgttgttagatgagtattacttcttatttacattgtagtttctttaccgagttgcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9601794 tccccacaaactgttgttagatgagtattacttcttatttacgttgtagtttctttaccaagttgcttg 9601726  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 9593031 - 9592972
Alignment:
Q  154 actgttgttagatgagtattacttcttatttacattgtagtttctttaccgagttgcttg 213  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  9593031 actgttgttagatgagtattacttcttatttatattgtggtttctttacggagttgcttg 9592972  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 9601878 - 9601824
Alignment:
Q  92 tcaaatttccatataagtatctgtttgctgtctcctctcattcgcatatatcatc 146  Q
    |||||| |||||| |||||||||||||||| |||||||||||| || ||||||||    
T  9601878 tcaaatctccatacaagtatctgtttgctgcctcctctcattcacaaatatcatc 9601824  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 9581037 - 9580998
Alignment:
Q  20 ggttatgtctataaccttcttaaaataagcataagtgtct 59  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  9581037 ggttatgtctaaaaccttcttataataagcataagtgtct 9580998  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 9586732 - 9586693
Alignment:
Q  20 ggttatgtctataaccttcttaaaataagcataagtgtct 59  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  9586732 ggttatgtctaaaaccttcttataataagcataagtgtct 9586693  T

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