View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_39 (Length: 250)

Name: NF10118_low_39
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_39
NF10118_low_39
[»] chr2 (2 HSPs)
chr2 (13-180)||(16915978-16916145)
chr2 (8-62)||(4076303-4076357)
[»] chr1 (8 HSPs)
chr1 (13-180)||(18431242-18431409)
chr1 (13-83)||(22788094-22788164)
chr1 (8-83)||(1014393-1014468)
chr1 (80-144)||(1014872-1014936)
chr1 (142-183)||(22787424-22787465)
chr1 (142-182)||(11943666-11943706)
chr1 (142-185)||(5458618-5458661)
chr1 (146-185)||(6154068-6154107)
[»] scaffold0571 (1 HSPs)
scaffold0571 (23-183)||(1-161)
[»] chr7 (8 HSPs)
chr7 (8-180)||(46437650-46437822)
chr7 (8-83)||(39780565-39780640)
chr7 (80-138)||(39786133-39786191)
chr7 (142-183)||(38663364-38663405)
chr7 (146-185)||(39781160-39781199)
chr7 (146-183)||(43266096-43266133)
chr7 (145-185)||(42896847-42896887)
chr7 (142-183)||(36616865-36616906)
[»] chr6 (9 HSPs)
chr6 (19-185)||(5013726-5013891)
chr6 (8-83)||(18819423-18819498)
chr6 (13-83)||(16693310-16693380)
chr6 (80-144)||(18819094-18819158)
chr6 (80-144)||(24903862-24903926)
chr6 (8-83)||(24904329-24904404)
chr6 (142-183)||(16693607-16693648)
chr6 (142-184)||(18816825-18816867)
chr6 (142-184)||(595770-595812)
[»] chr8 (6 HSPs)
chr8 (8-83)||(28535497-28535572)
chr8 (8-83)||(45483722-45483797)
chr8 (80-144)||(45484062-45484126)
chr8 (16-83)||(11463630-11463697)
chr8 (142-183)||(45486353-45486394)
chr8 (146-183)||(11462730-11462767)
[»] chr5 (10 HSPs)
chr5 (8-83)||(25634141-25634216)
chr5 (8-83)||(17074892-17074967)
chr5 (13-83)||(18113464-18113534)
chr5 (81-140)||(17075326-17075385)
chr5 (16-81)||(424471-424536)
chr5 (146-183)||(9047488-9047525)
chr5 (146-182)||(423987-424023)
chr5 (146-184)||(18108361-18108399)
chr5 (145-182)||(17077002-17077039)
chr5 (144-185)||(13475552-13475593)
[»] chr4 (8 HSPs)
chr4 (8-83)||(45067438-45067513)
chr4 (8-80)||(8903570-8903642)
chr4 (80-144)||(8904153-8904217)
chr4 (80-144)||(45066030-45066094)
chr4 (142-176)||(45065888-45065922)
chr4 (146-179)||(8904430-8904463)
chr4 (145-185)||(2917615-2917655)
chr4 (144-184)||(47286603-47286643)
[»] chr3 (15 HSPs)
chr3 (8-83)||(25069599-25069674)
chr3 (8-83)||(26905661-26905736)
chr3 (8-83)||(36615304-36615379)
chr3 (8-83)||(52118629-52118704)
chr3 (8-83)||(28211380-28211455)
chr3 (80-144)||(26905332-26905396)
chr3 (80-144)||(36615644-36615708)
chr3 (8-83)||(26556957-26557032)
chr3 (142-185)||(25070869-25070912)
chr3 (142-184)||(26903063-26903105)
chr3 (142-184)||(36617935-36617977)
chr3 (142-183)||(26557644-26557685)
chr3 (142-183)||(28210880-28210921)
chr3 (142-183)||(52119126-52119167)
chr3 (146-183)||(2125769-2125806)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 16916145 - 16915978
Alignment:
Q  13 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16916145 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttaggcctccaatttcaagctatcatcctgaca 16916046  T
Q  113 tcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 180  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16916045 tccaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctaaatccgccc 16915978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4076357 - 4076303
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctaca 62  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4076357 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctaca 4076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 18431409 - 18431242
Alignment:
Q  13 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgaca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18431409 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgtttttttagggttttaggcctccaatttcaagctatcatcctgaca 18431310  T
Q  113 tcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 180  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431309 tccaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 18431242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 22788164 - 22788094
Alignment:
Q  13 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22788164 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 22788094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 1014393 - 1014468
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  1014393 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgattttttagggttttag 1014468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 1014872 - 1014936
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1014872 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 1014936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 22787465 - 22787424
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  22787465 aaattttgccacactaatatgacatgtctagatccgcccctg 22787424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 11943706 - 11943666
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccct 182  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  11943706 aaattttgccacactaatatcaaatgtctagatccgcccct 11943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 5458661 - 5458618
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||    
T  5458661 aaattttgccacaccaatatcaaatgtctacatccgcccctgat 5458618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 6154107 - 6154068
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6154107 tttgccacactaatatgaaatgtctagatccacccatgat 6154068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 1 - 161
Alignment:
Q  23 aaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||    
T  1 aaatagtcaattgattctctactttctcattcattctacaattgcttttttaggattttaggcctccaatttcaagctatcatcctgacatccaaaatga 100  T
Q  123 ggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  101 ggtacgcaaagcttacttgaaattttgccacactaatatgaaatgtctagatccacccctg 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 46437650 - 46437822
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcc 107  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  46437650 aagccaaggtaggtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttaggattttaggcctccaatttcaagctatcatcc 46437749  T
Q  108 tgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 180  Q
    ||||||| ||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46437750 tgacatccaagatgcagtacgcaaagcttacttgaaattttgccacactaatataaaatgtctagatccgccc 46437822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 39780565 - 39780640
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39780565 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 39780640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 39786191 - 39786133
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttac 138  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  39786191 ttaggcctccaatttcaaactatcatcctgacattcaagatgaggtacgtaaagcttac 39786133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 38663364 - 38663405
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  38663364 aaattttgccacactaatatgcaatgtctagatccgcccctg 38663405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 39781160 - 39781199
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39781160 tttgccacactaatatgcaatgtctagatccgcccctgat 39781199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 43266096 - 43266133
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  43266096 tttgccacactaatatgcaatgtctagatccgcccctg 43266133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 42896887 - 42896847
Alignment:
Q  145 ttttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  42896887 ttttgccacaccaatatcaaatgtctagatccgcccctgat 42896847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 36616906 - 36616865
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||| |||||| ||||| |||||||||||||||||||||    
T  36616906 aaattttaccacaccaatatcaaatgtctagatccgcccctg 36616865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 5013891 - 5013726
Alignment:
Q  19 agtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaag 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||    
T  5013891 agtgaaatagtcaattgattctttactttctcattcattctacaattgcttttttagggttttaggccttcaatttcaagctatcatcctg-catccaag 5013793  T
Q  119 atgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5013792 atgaggcatgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgtccctgat 5013726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 18819498 - 18819423
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18819498 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 18819423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 16693310 - 16693380
Alignment:
Q  13 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16693310 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 16693380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 18819158 - 18819094
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18819158 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 18819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 24903926 - 24903862
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24903926 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 24903862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 24904404 - 24904329
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24904404 aagcgaaggtaagtgaaattttcaattgattctctactttctcattcattctacaattgcttttttagggttttag 24904329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 16693607 - 16693648
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16693607 aaattttgccacactaatatgaaatgtctagatccgcccctg 16693648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 18816867 - 18816825
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctga 184  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  18816867 aaattttgccacactaatatgcaatgtctagatccgcccctga 18816825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 595770 - 595812
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctga 184  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  595770 aaattttgccacactaatatcaaatgtctagatccacccctga 595812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 28535497 - 28535572
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28535497 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 28535572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 45483722 - 45483797
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45483722 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 45483797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 45484062 - 45484126
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45484062 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 45484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 11463697 - 11463630
Alignment:
Q  16 gtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  11463697 gtaagtgaaatagtcaattgattctctactttctcattcattctacaatttctattttagggttttag 11463630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 45486353 - 45486394
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45486353 aaattttgccacactaatatgcaatgtctagatccgcccctg 45486394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11462767 - 11462730
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  11462767 tttgccacactaatatgaaatgtctagattcgcccctg 11462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 25634216 - 25634141
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25634216 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 25634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 17074892 - 17074967
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17074892 aagccaaggtaagtgagatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 17074967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 18113534 - 18113464
Alignment:
Q  13 aaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18113534 aaggtaagtgaaatattcaattgattctctactttttcattcattctacaattgcttttttagggttttag 18113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 17075326 - 17075385
Alignment:
Q  81 taggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttactt 140  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  17075326 taggcctccaatttcaagctatcaacctgacatccaagatgaggtatgtaaagcttactt 17075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 424536 - 424471
Alignment:
Q  16 gtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggtttt 81  Q
    |||| ||||||| | |||||||||||||| ||||| |||||||||| ||||||||||| |||||||    
T  424536 gtaaatgaaatattaaattgattctctaccttctcgttcattctacgattgcttttttagggtttt 424471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 9047525 - 9047488
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9047525 tttgccacactaatatgaaatgtctagatccgcccctg 9047488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 424023 - 423987
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccct 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  424023 tttgccacactaatatgaaatgtctagatccgcccct 423987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 18108399 - 18108361
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctga 184  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  18108399 tttgccacactaatataaaatgtctagatccgcccctga 18108361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 17077002 - 17077039
Alignment:
Q  145 ttttgccacactaatatgaaatgtctagatccgcccct 182  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  17077002 ttttgtcacactaatatgaaatgtctagatccgcccct 17077039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 13475593 - 13475552
Alignment:
Q  144 attttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    |||||||||||| ||||| |||||||| ||||||||||||||    
T  13475593 attttgccacaccaatatcaaatgtctggatccgcccctgat 13475552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 45067513 - 45067438
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45067513 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 45067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 8903570 - 8903642
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttt 80  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  8903570 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgctattttagggttt 8903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 8904153 - 8904217
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8904153 ttaggcctccaatttcatgctatcatcctgtcatctaagatgaggtacgtaaagcttacttgaaa 8904217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 45066094 - 45066030
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  45066094 ttaggcctccaatttcaagctatcttcctgaaatccaagatgaggtacgtaaagcttacttgaaa 45066030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 45065922 - 45065888
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatcc 176  Q
    |||||||||||||||||||||||||||||||||||    
T  45065922 aaattttgccacactaatatgaaatgtctagatcc 45065888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 8904430 - 8904463
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcc 179  Q
    ||||||||||||||||||||||||||||||||||    
T  8904430 tttgccacactaatatgaaatgtctagatccgcc 8904463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 2917655 - 2917615
Alignment:
Q  145 ttttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  2917655 ttttgccacaccaatatcaaatgtctagatccgcccatgat 2917615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 47286643 - 47286603
Alignment:
Q  144 attttgccacactaatatgaaatgtctagatccgcccctga 184  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  47286643 attttgccacaccaatatcaaatgtctggatccgcccctga 47286603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 25069599 - 25069674
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25069599 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 25069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 26905736 - 26905661
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26905736 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 26905661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 36615304 - 36615379
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36615304 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 36615379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 52118629 - 52118704
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52118629 aagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 52118704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 28211455 - 28211380
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28211455 aagccaaggtaagtgaaataatcaattgattctctactttctcattcattctacaattgcttttttagggttttag 28211380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 26905396 - 26905332
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26905396 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 26905332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 36615644 - 36615708
Alignment:
Q  80 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36615644 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 36615708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 26556957 - 26557032
Alignment:
Q  8 aagcaaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 83  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  26556957 aagccaaggtaagtgaaatagtcaattaattctctactttctcattcattctacaattgcttttttaggattttag 26557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 25070869 - 25070912
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctgat 185  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  25070869 aaattttgccacactaatatgcaatgtctagatccgcccctgat 25070912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 26903105 - 26903063
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctga 184  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  26903105 aaattttgccacactaatatgcaatgtctagatccgcccctga 26903063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 36617935 - 36617977
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctga 184  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  36617935 aaattttgccacactaatatgcaatgtctagatccgcccctga 36617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 26557644 - 26557685
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  26557644 aaattttgccacactaatatgacatgtctagatccgcccctg 26557685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 28210921 - 28210880
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  28210921 aaattttgccacactaatatgcaatgtctagatccgcccctg 28210880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 52119126 - 52119167
Alignment:
Q  142 aaattttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  52119126 aaattttgccacactaatatgacatgtctagatccgcccctg 52119167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 2125769 - 2125806
Alignment:
Q  146 tttgccacactaatatgaaatgtctagatccgcccctg 183  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2125769 tttgccacactaatatgcaatgtctagatccgcccctg 2125806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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