View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10118_low_40 (Length: 250)
Name: NF10118_low_40
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_40 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11779683 - 11779922
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779683 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatggagtctca |
11779782 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11779783 |
agtatgtaagacaaatgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcatagatagagaatcact |
11779882 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccctttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11779883 |
atcaagcaatgacaattgtgtcttttcaccaagtcctttg |
11779922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11771602 - 11771370
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771602 |
aaggataagttctcacaatctttaatatgaagtatttgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
11771503 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11771502 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcaacatacttttcaatcactacatgttgcatcatagatagagaatcact |
11771403 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaag |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
11771402 |
atcaagcaatgacaactgtgtcttttcaccaag |
11771370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 9841203 - 9840991
Alignment:
| Q |
24 |
aatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
9841203 |
aatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctc |
9841104 |
T |
|
| Q |
124 |
aaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcactatcaagcaatgacaattgtgtct |
223 |
Q |
| |
|
| |||||||||||| |||||| |||| | | ||||||||||||||||||||| |||||||| | || |||||||||| ||||||||||||||||| | |
|
|
| T |
9841103 |
agaatcaattttggaacaactaatagtttaacacacttttcaatcactacatcttgcatcatacatggagaatcactctcaagcaatgacaattgggaac |
9841004 |
T |
|
| Q |
224 |
tttcaccaagccc |
236 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9841003 |
tttcaccaagccc |
9840991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 10431742 - 10431956
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||| | || ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10431742 |
aaggataaattctcacatttttcaatttcaagtgattgcaatgaagtgggtagaccacttgatggaaatgcagtgagagaagaaagagaatcgagtctca |
10431841 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
10431842 |
agtgtgtaagacaagtgcttctcagaatcaattttggcacaactaatagcttaacacagttttcaatcactacatgttgcatcatacacggagaatcact |
10431941 |
T |
|
| Q |
201 |
atcaagcaatgacaa |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10431942 |
ctcaagcaatgacaa |
10431956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9852107 - 9851872
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
9852107 |
aaggataaattctcacaattttcaatatcaagtgattgcaatgaagtgggtagaccacttgatggaaatgcattgagagaagaaagtgaatcgagtctca |
9852008 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||| || |||||| | |||||||||||||| |||||| |||||||| | | |||||||||| |
|
|
| T |
9852007 |
agtgtgtaagacaagtgcttctcataatcaattttggcacagctaatagcttaacacacttttcaatctctacatcttgcatcatacacggagaatcact |
9851908 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |
|
|
| T |
9851907 |
ctcaagcaatgacaattgggaactttcaccaagccc |
9851872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10129293 - 10129058
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||| | || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10129293 |
aaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaatagagtctca |
10129194 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||| ||| |||||||||||||||| || |||||| || ||| || | |||| ||||||||||||||| | | |||||||||| |
|
|
| T |
10129193 |
agtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttagaacagttgtgaatcgctacatgttgcatcatacacggagaatcact |
10129094 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |
|
|
| T |
10129093 |
ctcaagcaatgacaattgggaactttcaccaagccc |
10129058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10519853 - 10519618
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
10519853 |
aaggataaattctcacaacattgaatattaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtccca |
10519754 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||| ||| |||||||||||||||| || |||||| | ||||||||| |||| |||||| |||||||| | | |||||||||| |
|
|
| T |
10519753 |
agtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttaacacactttttaatctctacatcttgcatcatacaaggagaatcact |
10519654 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |
|
|
| T |
10519653 |
ctcaagcaatgacaattgggaactttcaccaagccc |
10519618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10582979 - 10582744
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
10582979 |
aaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgtagtgagagaagaaagagaatagagtctca |
10582880 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||| || |||| | | | || ||| | |||||| ||| |||||||| | | |||||||||| |
|
|
| T |
10582879 |
agtgtgtaagacaagtgcttctcagaatcaattttggcacagctaataggttaacgcagtttgccatcactgcatcttgcatcatacacggagaatcact |
10582780 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
10582779 |
ctcaagcaataacaattgggtcctttcaccaagccc |
10582744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10034371 - 10034158
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||| | | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| || |
|
|
| T |
10034371 |
aaggataaattctcacattttacaatatgaagtgattgcaatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaattgagttcca |
10034272 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| || |||||| || ||| || | |||| ||||||||||||||| | | |||||||||| |
|
|
| T |
10034271 |
agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagcttagaacagttgtgaatcgctacatgttgcatcatacacggagaatcact |
10034172 |
T |
|
| Q |
201 |
atcaagcaatgaca |
214 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10034171 |
ctcaagcaatgaca |
10034158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 10361502 - 10361737
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| || |
|
|
| T |
10361502 |
aaggataaattctcacaattttcaatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagattaccgagtccca |
10361601 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||| ||| ||| ||| ||||||| ||||||| |||||||||||| | || ||||||| || |
|
|
| T |
10361602 |
agagtgtaagacaagtgcttctcagaatcaattttggcacagatgacagcatagcgcacttttgaatcactgcatgttgcatcatacatggagaatcgct |
10361701 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
|||| ||||||||||| ||| || || ||||||| |
|
|
| T |
10361702 |
cccaagaaatgacaattgggtccttccatcaagccc |
10361737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10373543 - 10373756
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||| | | |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |
|
|
| T |
10373543 |
aaggataaattctcacagtatctaatttcaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagttcca |
10373642 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| ||| || ||| || | |||| | ||| ||||| | |||||||| | | |||||||||| |
|
|
| T |
10373643 |
agtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaacacattcacgaataactacttcttgcatcatacacggagaatcact |
10373742 |
T |
|
| Q |
201 |
atcaagcaatgaca |
214 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10373743 |
ctcaagcaatgaca |
10373756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 10091130 - 10090931
Alignment:
| Q |
33 |
tgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatcaat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | ||||||||||||||| ||||| | |
|
|
| T |
10091130 |
tgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatt |
10091031 |
T |
|
| Q |
133 |
tttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcactatcaagcaatgacaattgtgtcttttcaccaa |
232 |
Q |
| |
|
||||||| | || |||||| |||||||||| ||||||||||| || ||||| | || |||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
10091030 |
tttggcatagctaatagcttagcacactttcgaatcactacatcttccatcatacatggagaatcactctcaagcaatgacaattgggtcctttcaccaa |
10090931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10263069 - 10262834
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||||| | ||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| ||| |
|
|
| T |
10263069 |
aaggataaattctcacaatttacaatttcaagtgattgcaatgaagtgggtagaccacttgagggaaatgtagtgagagaaggaagagaactgagtttca |
10262970 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| ||| |||||||||||||||| |||||||||||| ||| || ||| || | |||| | ||| ||||| | |||||||| | | |||||||||| |
|
|
| T |
10262969 |
agtgtgttagacaagtgcttctcagaatcaattttggaacagctaataacttaacacattcacgaataactacttcttgcatcatacacggagaatcact |
10262870 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
||||||||||||||||| ||| || || ||||||| |
|
|
| T |
10262869 |
ctcaagcaatgacaattgggtccttccatcaagccc |
10262834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 10665811 - 10665696
Alignment:
| Q |
24 |
aatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctc |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
10665811 |
aatattaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagtgaatagagtgccaagtgtgtaagacaagtgcttctc |
10665712 |
T |
|
| Q |
124 |
aaaatcaattttggca |
139 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
10665711 |
ataatcaattttggca |
10665696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 10198012 - 10197813
Alignment:
| Q |
33 |
tgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatcaat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | ||||||||||||||| ||||| | |
|
|
| T |
10198012 |
tgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatt |
10197913 |
T |
|
| Q |
133 |
tttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcactatcaagcaatgacaattgtgtcttttcaccaa |
232 |
Q |
| |
|
||||||| | || |||||| |||||||||| ||||||||||| || ||||| | | |||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
10197912 |
tttggcatagctaatagcttagcacactttcgaatcactacatcttccatcatacacggagaatcactctcaagcaatgacaattgggtcctttcaccaa |
10197813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 13853191 - 13853344
Alignment:
| Q |
30 |
aagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatc |
129 |
Q |
| |
|
|||||||||||||| ||| || |||||||||| |||||| |||||||||| | || | || |||| |||||| | |||| ||||||||||||||||| |
|
|
| T |
13853191 |
aagtgattgcaatggagttggcagaccacttgacggaaatacagtgagagatggaatatcatagagtttcaagtgttgaagaaaagtgcttctcaaaatc |
13853290 |
T |
|
| Q |
130 |
aattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatc |
183 |
Q |
| |
|
|||||||||| | ||| ||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
13853291 |
aattttggcatagatgacagcataacacacttttcaatcactgcatgttgcatc |
13853344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10502950 - 10502716
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||| | |||||| |||||||||| | || | || |||| || |
|
|
| T |
10502950 |
aaggataaattctcacaccttttaatactaagtgactgcaaagaagtgggtagaccatctttgggaaacacagtgagagatggaatatcatagagttcca |
10502851 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| | ||||||||||||||||||| ||| |||||| | | | ||||| | ||||| | ||| |||||||||||||||| | || |||| ||||| |
|
|
| T |
10502850 |
agtgttgaagacaagtgcttctcaaa-tcatttttggaatagataatagcgtaacacacctacaaatgactacatgttgcatcatacatggagagtcact |
10502752 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |
|
|
| T |
10502751 |
cccaagcaatgataattgagtcttttcaccaagccc |
10502716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 11244247 - 11244303
Alignment:
| Q |
24 |
aatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagaga |
80 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
11244247 |
aatatgaagtgtttgcaaagaagtgggtagaccatttgtaggaaatgcagtgagaga |
11244303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 13397820 - 13397764
Alignment:
| Q |
29 |
gaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaa |
85 |
Q |
| |
|
||||||| ||||| |||||||| |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
13397820 |
gaagtgactgcaacgaagtgggaagaccatttgctggaaatgcagtgagagaggaaa |
13397764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 55303 - 55538
Alignment:
| Q |
1 |
aaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctca |
100 |
Q |
| |
|
|||||||| |||||||| | || |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
55303 |
aaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagtgaatggagtttca |
55402 |
T |
|
| Q |
101 |
agtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcact |
200 |
Q |
| |
|
||| |||||||||||||||| ||| |||||||||||||||| || |||||| || ||| || | |||| ||||||||||||||| | | |||||||||| |
|
|
| T |
55403 |
agtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttagaacagttgtgaatcgctacatgttgcatcatacacggagaatcact |
55502 |
T |
|
| Q |
201 |
atcaagcaatgacaattgtgtcttttcaccaagccc |
236 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |
|
|
| T |
55503 |
ctcaagcaatgacaattgggaactttcaccaagccc |
55538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 26909224 - 26909041
Alignment:
| Q |
33 |
tgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatcaat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | |||||| |||||||||| ||||||| |
|
|
| T |
26909224 |
tgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacatgtgcttctcagaatcaat |
26909125 |
T |
|
| Q |
133 |
tttggcacaactgatagctcagcacacttttcaatcactacatgttgcatcagagatagagaatcactatcaagcaatgacaat |
216 |
Q |
| |
|
||||||| | || ||||| || |||| |||| ||||||||||| |||||||| | | |||||||||| | ||||||||||||| |
|
|
| T |
26909124 |
tttggcaaacctaatagcccaacacaattttgaatcactacatcttgcatcatacagggagaatcactcttaagcaatgacaat |
26909041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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