View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_43 (Length: 242)
Name: NF10118_low_43
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_43 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34207899 - 34207658
Alignment:
| Q |
1 |
ctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34207899 |
ctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttcca |
34207800 |
T |
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| Q |
101 |
atgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34207799 |
atgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttg |
34207700 |
T |
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| Q |
201 |
gtgtaaccctccacgaccacactttgatcttgctatgcctat |
242 |
Q |
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| T |
34207699 |
gtgtaaccctccacgaccacactttgatcttgctatgcctat |
34207658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 23858872 - 23858632
Alignment:
| Q |
2 |
tgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttccaa |
101 |
Q |
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| T |
23858872 |
tgtacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgcttgttttgagataaagtgtgcaaa |
23858773 |
T |
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| Q |
102 |
tgatcctagt-tggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttg |
200 |
Q |
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||| | || ||||| || |||| ||||||||||| || | |||||||| || |||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
23858772 |
tga-caaagagtggtgtcattctgggagtccttcaattttcattactgctactaacttttgtcctcctaattttgctcaagcaagtgataatggtggttg |
23858674 |
T |
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| Q |
201 |
gtgtaaccctccacgaccacactttgatcttgctatgcctat |
242 |
Q |
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| T |
23858673 |
gtgtaaccctcctcgtcctcattttgatcttgctatgcctat |
23858632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 41491248 - 41491008
Alignment:
| Q |
2 |
tgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttccaa |
101 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || | |||||||| || |||||||| || |||||| | || |
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| T |
41491248 |
tgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaa |
41491149 |
T |
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| Q |
102 |
tgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttgg |
201 |
Q |
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||| ||||| ||| |||| || ||||| || || | || ||||| || |||||||| || || ||||||||| | ||||| ||||| |||||| |
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| T |
41491148 |
tgacaagcaatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttgg |
41491049 |
T |
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| Q |
202 |
tgtaaccctccacgaccacactttgatcttgctatgcctat |
242 |
Q |
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| T |
41491048 |
tgtaaccctcctcgtcctcactttgatcttgccatgcctat |
41491008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 22314230 - 22313998
Alignment:
| Q |
10 |
caaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttccaatgatccta |
109 |
Q |
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||||| ||||| || |||||||||||| |||||||||||||||||||||| || || |||||||| | |||||||| | |||||| | ||||| |
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| T |
22314230 |
caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac |
22314131 |
T |
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| Q |
110 |
gttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttggtgtaaccc |
209 |
Q |
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||||||| ||||||||| || ||||| || | ||||| ||||| ||||| || ||||||||||||||| | ||||| ||||| || ||||| ||||| |
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| T |
22314130 |
gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc |
22314031 |
T |
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| Q |
210 |
tccacgaccacactttgatcttgctatgcctat |
242 |
Q |
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| T |
22314030 |
acctagacctcactttgatcttgctatgcctat |
22313998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 2867191 - 2867145
Alignment:
| Q |
28 |
acagcagcattaagcacagcactattcaacaacggtttgagttgtgg |
74 |
Q |
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||||||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
2867191 |
acagcagcattgagcactgcactattcaacaatggattgagttgtgg |
2867145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 3814975 - 3814903
Alignment:
| Q |
2 |
tgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtgg |
74 |
Q |
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||||||||||||||||||| || ||||||||| | ||||| ||| |||||||||| |||||||||||||| |
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| T |
3814975 |
tgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtgg |
3814903 |
T |
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