View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_45 (Length: 240)

Name: NF10118_low_45
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_45
NF10118_low_45
[»] chr8 (5 HSPs)
chr8 (24-240)||(33950801-33951023)
chr8 (21-240)||(33990274-33990508)
chr8 (18-149)||(33973444-33973575)
chr8 (24-149)||(33959448-33959573)
chr8 (199-240)||(33973577-33973618)
[»] scaffold0391 (2 HSPs)
scaffold0391 (54-143)||(10335-10424)
scaffold0391 (175-240)||(10474-10539)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 33950801 - 33951023
Alignment:
Q  24 agaaagtgcatgcaaatcttcttttgagaatgattcctacg------ttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttac 117  Q
    |||||||||||| | || ||||| ||||||||||||||| |      ||||||| |||||||||||||||| |||||| ||||| |||||||| |||||     
T  33950801 agaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttat 33950900  T
Q  118 aaggccagagaaattcttgagcttctcaaccatgaattcaatgaagatggacaacttttcaagcgtcctttcgatgttcctgaaaatccaaaattcactg 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  33950901 aagaccagagaaattcttgagcttctcaaccatgaattcaatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactg 33951000  T
Q  218 ttgggttggatataccatttagc 240  Q
    |||||||||||||||||||||||    
T  33951001 ttgggttggatataccatttagc 33951023  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 33990274 - 33990508
Alignment:
Q  21 agaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaag 120  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  33990274 agaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataag 33990373  T
Q  121 gccagagaaattcttgagcttctcaaccatg---------------aattcaatgaagatggacaacttttcaagcgtcctttcgatgttcctgaaaatc 205  Q
    ||||||||||||||||||||||||||| |||               |||||||||||| |  || || ||||||||||||||||||||||||||||||||    
T  33990374 gccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatc 33990473  T
Q  206 caaaattcactgttgggttggatataccatttagc 240  Q
    |||||||||||||||||||||||||||||||||||    
T  33990474 caaaattcactgttgggttggatataccatttagc 33990508  T

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Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 33973444 - 33973575
Alignment:
Q  18 gatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33973444 gatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaatgatgtcgaagagacactttac 33973543  T
Q  118 aaggccagagaaattcttgagcttctcaacca 149  Q
    ||||||||||||||||||||||||||||||||    
T  33973544 aaggccagagaaattcttgagcttctcaacca 33973575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 33959448 - 33959573
Alignment:
Q  24 agaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggcc 123  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| |     
T  33959448 agaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagcca 33959547  T
Q  124 agagaaattcttgagcttctcaacca 149  Q
    ||||||||||||||||||||||||||    
T  33959548 agagaaattcttgagcttctcaacca 33959573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 33973577 - 33973618
Alignment:
Q  199 gaaaatccaaaattcactgttgggttggatataccatttagc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33973577 gaaaatccaaaattcactgttgggttggatataccatttagc 33973618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 10335 - 10424
Alignment:
Q  54 tgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttct 143  Q
    ||||||||| || |||||||| |||||||||||||  ||||| |||||  |||||||||||||||||||||||||||||||||| |||||    
T  10335 tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttct 10424  T

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Target: scaffold0391; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 10474 - 10539
Alignment:
Q  175 ttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagc 240  Q
    |||||| ||||||| | |||||| ||||||||| |||||| ||||||| | |||||||||||||||    
T  10474 ttcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccatttagc 10539  T

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