View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_50 (Length: 235)

Name: NF10118_low_50
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_50
NF10118_low_50
[»] chr4 (3 HSPs)
chr4 (114-219)||(598756-598858)
chr4 (86-134)||(44792148-44792196)
chr4 (92-133)||(290601-290642)
[»] chr3 (2 HSPs)
chr3 (15-81)||(53629849-53629915)
chr3 (96-133)||(53629504-53629541)
[»] chr8 (4 HSPs)
chr8 (86-134)||(39779342-39779390)
chr8 (84-133)||(22320895-22320944)
chr8 (84-133)||(32979567-32979616)
chr8 (84-133)||(38628699-38628748)
[»] chr1 (2 HSPs)
chr1 (82-133)||(12761242-12761293)
chr1 (84-121)||(12760944-12760981)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 598858 - 598756
Alignment:
Q  114 aggttaaatatatttatattcgattgtggaagcacgggaagaaacattccaaacatttctctagttcaaatcaaaatcccactattattatattgggtaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||   |||| ||||||||||    
T  598858 aggttaaatatatttatattcgattgtggaagcacgggaagaaacatttcaaacatttctccaattcaaatcaaaatctcac---tattctattgggtaa 598762  T
Q  214 taattg 219  Q
    ||||||    
T  598761 taattg 598756  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 44792196 - 44792148
Alignment:
Q  86 aattgatttgtaattgaaatatgaattaaggttaaatatatttatattc 134  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||||    
T  44792196 aattgatttgtaattgaaatatgaaattagtttaaatatatttatattc 44792148  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 290642 - 290601
Alignment:
Q  92 tttgtaattgaaatatgaattaaggttaaatatatttatatt 133  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  290642 tttgtaattgaaatatgaaattaggttaaatatatttatatt 290601  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 53629915 - 53629849
Alignment:
Q  15 aaagggagtggattttacgagtatgaaaaatgcgggtcatcgaattaaacaatttaaacaattcata 81  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||| ||||||||    
T  53629915 aaagggagtggattttacgagtacgaaaaatgctgatcatcgaattaaacaattcaaataattcata 53629849  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 53629541 - 53629504
Alignment:
Q  96 taattgaaatatgaattaaggttaaatatatttatatt 133  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  53629541 taattgaaatatgaaattaggttaaatatatttatatt 53629504  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 39779390 - 39779342
Alignment:
Q  86 aattgatttgtaattgaaatatgaattaaggttaaatatatttatattc 134  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  39779390 aattgatttgtaattgaaatatgaaattaggttaaatatatttatattc 39779342  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 22320895 - 22320944
Alignment:
Q  84 ataattgatttgtaattgaaatatgaattaaggttaaatatatttatatt 133  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||||    
T  22320895 ataattgatttgtaattgaaatatgaaattaggttaacaatatttatatt 22320944  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 32979567 - 32979616
Alignment:
Q  84 ataattgatttgtaattgaaatatgaattaaggttaaatatatttatatt 133  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||||    
T  32979567 ataattgatttgtaattgaaatatgaaattaggttaacaatatttatatt 32979616  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 38628699 - 38628748
Alignment:
Q  84 ataattgatttgtaattgaaatatgaattaaggttaaatatatttatatt 133  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||||    
T  38628699 ataattgatttgtaattgaaatatgaaattaggttaacaatatttatatt 38628748  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 12761242 - 12761293
Alignment:
Q  82 aaataattgatttgtaattgaaatatgaattaaggttaaatatatttatatt 133  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  12761242 aaataattgatttgtaattgaaatatgaaattaggttaaatatattcatatt 12761293  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 12760981 - 12760944
Alignment:
Q  84 ataattgatttgtaattgaaatatgaattaaggttaaa 121  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  12760981 ataattgatttgtaattgaaatatgaaattaggttaaa 12760944  T

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