View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10118_low_52 (Length: 231)
Name: NF10118_low_52
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 23852447 - 23852250
Alignment:
| Q |
20 |
agaaggatttaagatatcttgcaacaaagcactatg-ctgtacccaaaactgtgtggggcaatcttagggctaaaataatgtggtttttgaatcattgac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852447 |
agaaggatttaagatatcttgcaacaaagcactatggctgtacccaaaactgtgtggggtaatcttagggctaaaataatgtggtttttgaatcattgac |
23852348 |
T |
|
| Q |
119 |
tcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagtagggttaaagtaagattgccctaaacctaaaacaccatcatcatacctttg |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852347 |
tcggttctaatcccgattgacctataatcataaggtcgaaaaagagtagagttaaagtaagattgccctaaacctaaaacaccatcatcatacctttg |
23852250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 23856928 - 23856818
Alignment:
| Q |
105 |
tttgaatcattgactcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagtagggttaaagtaagattgccctaaacctaaaacaccatc |
204 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||| ||||||||||||| | |||||||||| |||||| |
|
|
| T |
23856928 |
tttgaatcattgactcggttttaa-cccaagtgacctataatcttaaggtcaaaaaagagtaggattaaagtaagatttctttaaacctaaagtaccatc |
23856830 |
T |
|
| Q |
205 |
atcatacctttg |
216 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
23856829 |
atcatatctttg |
23856818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 3156709 - 3156906
Alignment:
| Q |
20 |
agaaggatttaagatatcttgcaacaaagcactatg-ctgtacccaaaactgtgtggggcaatcttagggctaaaataatgtggtttttgaatcattgac |
118 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
3156709 |
agaagggtttaagatctcttgcaacaaagcactatgacggtacccaaaactgtgtggggtaatcttagggctaatataaggtggtttttgaatcattgac |
3156808 |
T |
|
| Q |
119 |
tcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagtagggttaaagtaagattgccctaaacctaaaacaccatcatcatacctttg |
216 |
Q |
| |
|
|||||||| | ||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | || ||| |||||||||||||| |
|
|
| T |
3156809 |
tcggttctgaccccgagtgacctataatcgtaaggtcgaaaaagagtaggataaaagtaagattgccccaaacttgaagcactgtcatcatacctttg |
3156906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 3138977 - 3139124
Alignment:
| Q |
20 |
agaaggatttaagatatcttgcaacaaagcactatg-ctgtacccaaaactgtgtggggcaatcttagggctaaaataatgtggtttttgaatcattgac |
118 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| || ||||||||||| ||||| | ||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3138977 |
agaagggtttaacatctcttgcaacaaagcactatgactatacccaaaactatgtggagtaattctagggttaaaataaggtggtttttgaatcattgac |
3139076 |
T |
|
| Q |
119 |
tcggttctaatcccaattgacctataatcgtaaggtcgaaaaagagta |
166 |
Q |
| |
|
|| | ||||| ||||| |||||||||| |||||| |||||||||| |
|
|
| T |
3139077 |
tctgatctaaccccaagtgacctataactataaggtgtaaaaagagta |
3139124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 3167414 - 3167364
Alignment:
| Q |
166 |
agggttaaagtaagattgccctaaacctaaaacaccatcatcatacctttg |
216 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||||| |||| |
|
|
| T |
3167414 |
agggttaaagtaaggttgccctaaaccaaaaacaccattttcatacttttg |
3167364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 7491154 - 7491199
Alignment:
| Q |
170 |
ttaaagtaagattgccctaaacctaaaacaccatcatcataccttt |
215 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
7491154 |
ttaaagtgagattgccctaaacctaaagcaccagcatcataccttt |
7491199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 7498875 - 7498920
Alignment:
| Q |
170 |
ttaaagtaagattgccctaaacctaaaacaccatcatcataccttt |
215 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
7498875 |
ttaaagtgagattgccctaaacctaaagcaccagcatcataccttt |
7498920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University