View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10118_low_53 (Length: 227)

Name: NF10118_low_53
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10118_low_53
NF10118_low_53
[»] chr7 (1 HSPs)
chr7 (20-212)||(28729544-28729728)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 28729544 - 28729728
Alignment:
Q  20 aatacttgtttgttggtctatttctttacaactttttgttatctgaccaacaaaatcaaccaagtcgtgacgtgttttatgtggtcatgagggagctcta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28729544 aatacttgtttgttggtctatttctttacaactttttgttatctgaccaacaaaatcaaccaagtcgtgacgtgttttatgtggtcatgagggagctcta 28729643  T
Q  120 gagattattacaaatttacaatacaaacacacatttgacatcacattaacattttactcaacatctctcaagacatcaagtataggtcctttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||  ||||||||||||||||||||||||||||    
T  28729644 gagattattacaaatttacaatacaaacacacatttgacatc------acattttactcaaca--tctcaagacatcaagtataggtcctttg 28729728  T

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