View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_56 (Length: 211)
Name: NF10118_low_56
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_56 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 44402838 - 44402930
Alignment:
| Q |
119 |
aaccctatcaccgacccatcaacgttttcaattccctgaaaactcgaatccaaggaaaacataccactaccactaagcgtctccgataacgga |
211 |
Q |
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| T |
44402838 |
aaccctatcaccgacccatcaacgttttcaattccctgaaaactggaatccaaggaaaacataccactaccactaagcgtctccgataacgga |
44402930 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44402732 - 44402784
Alignment:
| Q |
1 |
ctgctgagcagctttatccaactgctccataacaggccgtcctctcttccccc |
53 |
Q |
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| T |
44402732 |
ctgctgagcagctttatccaactgctccataacaggccgtcctctcttccccc |
44402784 |
T |
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