View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_7 (Length: 468)
Name: NF10118_low_7
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 37823885 - 37823611
Alignment:
| Q |
14 |
aggcaaaacttaatttttaaacttgagaaatgaaaattacttgattcaaaggtttgttaaataataaataaaaatgctaccataatgttggctcattagt |
113 |
Q |
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| T |
37823885 |
aggcaaaacttaatttttaaacttgagaaatgaaaattacttgattcaaaggtttgttaaataataaataaaaatgctaccataatgttggctcattagt |
37823786 |
T |
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| Q |
114 |
tgtgtcatgttaaactaaactattcagccttcgctaaaacaggtttaacaaaaacagcagtgcttggaagcagagtcgggttcaatggtctgtttaacac |
213 |
Q |
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| T |
37823785 |
tgtgtcatgttaaactaaactattcagccttc---------------actaaaacagcagtgcttggaagcagagtcgggttcaatggtctgtttatcac |
37823701 |
T |
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| Q |
214 |
tagcttagaagaaaaaagcaatgcaagtttggtcagtgaccgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
303 |
Q |
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| T |
37823700 |
tagcttggaagaaaaaagcaatgcaagtttggtcagtgaccgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
37823611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 37823386 - 37823297
Alignment:
| Q |
362 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggttcagaagcgaagaccatgattctagagccagtatt |
451 |
Q |
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| T |
37823386 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggtccagaagcgaagaccatgattctagagccagtatt |
37823297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 37823435 - 37823397
Alignment:
| Q |
309 |
ttagcaatctgcttatataaactgcaagatgtccattgc |
347 |
Q |
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| T |
37823435 |
ttagcaatttgcttgtataaactgcaagatgtccattgc |
37823397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 47597850 - 47597904
Alignment:
| Q |
362 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggt |
416 |
Q |
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| T |
47597850 |
gtcattgtgggttctcatggattgccggaaatcagagtccacaaccagtccaggt |
47597904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 47597385 - 47597440
Alignment:
| Q |
197 |
aatggtctgtttaacactagcttagaagaaaaaagcaatgcaagtttggtcagtga |
252 |
Q |
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| T |
47597385 |
aatggtctgtttatcactaacttggaagaaaaaagcaatgcaagttcggtcagtga |
47597440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 47597501 - 47597550
Alignment:
| Q |
254 |
cgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
303 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| | |||||| |
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| T |
47597501 |
cgttcttttttctaagagacatgcaaggtccaagagctccagaaattttg |
47597550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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