View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_8 (Length: 455)
Name: NF10118_low_8
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 47256606 - 47257030
Alignment:
| Q |
18 |
tttaggtttgcttgaaaagaaaatagctaatgaaaagcttttgtcttttacttcccaaggcatacatgtgctgtccctatattctaaacagaaccataag |
117 |
Q |
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| T |
47256606 |
tttaggcttgcttgaaaagaaaatagctaatgaaaagcttttgtcttttacttcccaaggcatacatgtgctgtccctatattctaaacagaaccataag |
47256705 |
T |
|
| Q |
118 |
tcacttgtttctagttaaccagaccatttcatttttataatctcacatttctgactgttaaaaaggagggagtaataaaaaattgaatgtaacataacat |
217 |
Q |
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| T |
47256706 |
tcacttgtttctagttaaccagaccatttcatttttataatctcacatttctgactgttaaaaaggagggagtaataaaaaattgaatgtaacataacat |
47256805 |
T |
|
| Q |
218 |
taaaccactttcttctccttttataaaccatcacaagtctcatgcatatgatagaatctctcaatgtcctctcatctctcagtactcacaaaacatcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47256806 |
taaaccactttcttctccttttataaaccatcacaagtctcatgcatatgatagaatctctcaatgtcctctcatctctcagtactcacaaaacatcaaa |
47256905 |
T |
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| Q |
318 |
aatttaacatggtctctcttgaacctgaacctgaacctgttcaaggtaataaccttagatctagtgatgcacctactagccctagaatatctttctcagc |
417 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47256906 |
aatttaacatggtctctct------tgaacctgaacctgttcaaggtaataaccttagatctagtgatgcacctactagccctagaatatctttctcagc |
47256999 |
T |
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| Q |
418 |
agagtttctagatgaaaacaacttcatctct |
448 |
Q |
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| T |
47257000 |
agagtttctagatgaaaacaacttcatctct |
47257030 |
T |
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