View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10118_low_9 (Length: 445)
Name: NF10118_low_9
Description: NF10118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10118_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 2 - 427
Target Start/End: Original strand, 1668372 - 1668797
Alignment:
| Q |
2 |
acaacaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttt |
101 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668372 |
acaacaccatttcctaacacttgactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttt |
1668471 |
T |
|
| Q |
102 |
tgcctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgtt |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
1668472 |
tgcctccaaataaaggacctatttgagaaatgagtgatgttggtcctcctccaagaccaattagacccatctcatggtcattaaaacccccagtgttgtt |
1668571 |
T |
|
| Q |
202 |
atgtccacaaccaaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668572 |
atgtccacaaccaaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaa |
1668671 |
T |
|
| Q |
302 |
ttatctccatagccatatgtgtaattgcaacgcttctcaggagaacacacacctgtgtcaagttgatgacacaagggagaatcacatgagatattattgt |
401 |
Q |
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|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
1668672 |
ttatctccgtagccataggtataattgcaacgcttctcaggagaacacacacctgtgtcaagtttgtgacacaaaggagaatcacatgagatgttattgt |
1668771 |
T |
|
| Q |
402 |
aagtggatgattttagaggatcaaac |
427 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
1668772 |
aagtggatgattttagaggatcaaac |
1668797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 1661113 - 1661499
Alignment:
| Q |
5 |
acaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgc |
104 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1661113 |
acaccatcccctaacacttgactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgc |
1661212 |
T |
|
| Q |
105 |
ctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgttatg |
204 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1661213 |
ctccaaataaaggacctatttgagaaatgagtgatgttggtcctcctccaagaccaattagacccatctcatggtcattaaaacccccagtgttgttatg |
1661312 |
T |
|
| Q |
205 |
tccacaaccaaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaatta |
304 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1661313 |
tccacaaccaaaaagaaatcttgaaagggaaacaagtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaatta |
1661412 |
T |
|
| Q |
305 |
tctccatagccatatgtgtaattgcaacgcttctcaggagaacacacacctgtgtcaagttgatgacacaagggagaatcacatgag |
391 |
Q |
| |
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||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
1661413 |
tctccgtagccataggtataattgcaacgcttctcaggagaacacacacctgtgtcaagtttgtgacacaaaggagaatcacatgag |
1661499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 1679920 - 1680333
Alignment:
| Q |
14 |
cctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgcctccaaata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679920 |
cctaacacttcactcccttttccaaaactcatttggcttgaaattgttatgtcggtgaggaaaggaaccaaacattgagaaaactttttgcctccaaata |
1680019 |
T |
|
| Q |
114 |
aaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgttatgtccacaacc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
1680020 |
aaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaattccctgtgttgttatgtccacaacc |
1680119 |
T |
|
| Q |
214 |
aaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaattatctccatag |
313 |
Q |
| |
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|||||||| || | |||||||| |||||| |||||||||||||| |||||| | || |||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
1680120 |
aaaaagaattccttgaagggaaataggtttccccgtgtttgatgttaaggtaactgtttcttgtgcaagaacacccttggttagagaactatctgcatag |
1680219 |
T |
|
| Q |
314 |
ccatatgtgtaattgcaacgcttctcaggagaacacacacctgtgtcaagttgatgacacaagggagaatcacatgagatattattgtaagtggatgatt |
413 |
Q |
| |
|
||||| ||||||| ||| || ||||||||||||||| ||||| ||| | ||| | ||||| ||||||||||||||||||||| |||| || || |||| |
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| T |
1680220 |
ccataggtgtaatcgcaccgtttctcaggagaacactcacctatgtaaggtttgtagcacaatggagaatcacatgagatattagtgtatgttgaagatt |
1680319 |
T |
|
| Q |
414 |
ttagaggatcaaac |
427 |
Q |
| |
|
|||||||||||||| |
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| T |
1680320 |
ttagaggatcaaac |
1680333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 24546814 - 24547027
Alignment:
| Q |
5 |
acaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgc |
104 |
Q |
| |
|
|||||||| || || |||||||| ||||| |||||||||||| |||||| ||| | | ||| |||| ||||||||||||||||||||| | |||| |
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| T |
24546814 |
acaccattccccaatacttcacttcctttaccaaaactcattgggcttgtaatactagggttagtgtggaatggaaccaaacattgagaaaacatcttgc |
24546913 |
T |
|
| Q |
105 |
ctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgttatg |
204 |
Q |
| |
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||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||| || | ||||||||| | |||||| ||| ||| |||||||||| |
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| T |
24546914 |
ctccaaaagaagaacctatttgagaaacgagtgacaagggtcctcttccaagacctattatacccatctctttgtcattgaaaacaccattgttgttatg |
24547013 |
T |
|
| Q |
205 |
tccacaaccaaaaa |
218 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
24547014 |
tccacatccaaaaa |
24547027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 15798000 - 15798097
Alignment:
| Q |
77 |
ggaaccaaacattgagaaaactttttgcctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctc |
174 |
Q |
| |
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||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||| || | ||||||||| |
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| T |
15798000 |
ggaaccaaacattgagaaaacatgttgcctccaagggaagaacctatttgagaaacaagtgacaagggtcctcttccaagacctattatacccatctc |
15798097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 15797928 - 15797980
Alignment:
| Q |
5 |
acaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaat |
57 |
Q |
| |
|
|||||||| || || |||||||| ||||| |||||||||||| |||||||||| |
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|
| T |
15797928 |
acaccattccccaatacttcacttcctttaccaaaactcattgggcttgaaat |
15797980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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