View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_high_13 (Length: 230)
Name: NF10119_high_13
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 34314523 - 34314724
Alignment:
| Q |
18 |
agagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttctta |
117 |
Q |
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| T |
34314523 |
agagctgaaaggatgtatggaaaattctggagacagcttagattgccggagaatgctgattttgattccgtgaaggctaaggtggaaaatggtgttctta |
34314622 |
T |
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| Q |
118 |
ttttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatcaggcaaacttaatgatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
34314623 |
ttttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatcaggcaagcttaataatga |
34314722 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
34314723 |
tg |
34314724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 34304696 - 34304532
Alignment:
| Q |
33 |
tatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttcttattttgacacttaata |
132 |
Q |
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| T |
34304696 |
tatggaaaattttggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaata |
34304597 |
T |
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| Q |
133 |
agctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatca |
200 |
Q |
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| T |
34304596 |
agttgtctcatg---atcagattaaaagtactagagttgttagcattgatgaggagaatgagaaatca |
34304532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 33426375 - 33426558
Alignment:
| Q |
33 |
tatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttcttattttgacacttaata |
132 |
Q |
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| T |
33426375 |
tatggaaaattttggagacagtttagattgcctgaaaatgctgatttggattcggttaaggccaagatggaaaatggtgttcttactttaacacttcgta |
33426474 |
T |
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| Q |
133 |
agctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatcaggcaaacttaatgatgatg |
219 |
Q |
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| T |
33426475 |
agttgtcacatg---gtaagattaaaagtactagacttgttagcattgaggaggagaatgagaaagcaagcaagcttagcgatgatg |
33426558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 34317225 - 34317104
Alignment:
| Q |
23 |
tgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttcttattttg |
122 |
Q |
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||||||| |||| |||||||||||||||||| | ||||||||||||||||||||||| ||||| | |||||||| ||||||||| ||||||| |||| |
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| T |
34317225 |
tgaaagggtgtacggaaaattctggagacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttg |
34317126 |
T |
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| Q |
123 |
acacttaataagctgtcccatg |
144 |
Q |
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||| |||||||| |||| |||| |
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| T |
34317125 |
acatttaataagttgtcgcatg |
34317104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 34322871 - 34322759
Alignment:
| Q |
33 |
tatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttcttattttgacacttaata |
132 |
Q |
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||||| ||||||||||| || |||||||||| || |||| |||||| ||||| |||||||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
34322871 |
tatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggctaagatggaaaatggtgtacttactttgacacttaata |
34322772 |
T |
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| Q |
133 |
agctgtcccatga |
145 |
Q |
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| T |
34322771 |
agttgtcacatga |
34322759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 34312100 - 34312206
Alignment:
| Q |
33 |
tatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttcttattttgacacttaata |
132 |
Q |
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||||||||||||||||| || ||||||||||||| |||| |||||| || || || |||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
34312100 |
tatggaaaattctggaggcaatttagattgccagaaaatgttgatttggactcagttaaggctaaaatggaaaatggtgtacttactttgacacttaata |
34312199 |
T |
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| Q |
133 |
agctgtc |
139 |
Q |
| |
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|| |||| |
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| T |
34312200 |
agttgtc |
34312206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 25651347 - 25651248
Alignment:
| Q |
18 |
agagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggtggaaaatggtgttctta |
117 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||| |||||||| ||||| |||| |||||| ||||| | ||| | ||| ||||| |||||||||||| |
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| T |
25651347 |
agagttgaaaggatgtgtggaaaattctggagacaacttagattaccagaaaatgttgatttggattcgattaagacaaagatggaagatggtgttctta |
25651248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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