View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10119_low_11 (Length: 374)

Name: NF10119_low_11
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10119_low_11
NF10119_low_11
[»] chr4 (14 HSPs)
chr4 (1-351)||(36630498-36630851)
chr4 (101-347)||(36642258-36642494)
chr4 (106-351)||(36910737-36910978)
chr4 (102-317)||(36635595-36635804)
chr4 (43-285)||(18365469-18365703)
chr4 (43-285)||(36597222-36597455)
chr4 (243-351)||(35969502-35969610)
chr4 (102-284)||(18361271-18361441)
chr4 (101-152)||(18084429-18084480)
chr4 (101-152)||(36664529-36664580)
chr4 (102-217)||(36601486-36601589)
chr4 (235-284)||(36601608-36601657)
chr4 (229-281)||(18084309-18084361)
chr4 (229-281)||(36664648-36664700)
[»] chr8 (1 HSPs)
chr8 (248-351)||(35336944-35337047)
[»] chr1 (2 HSPs)
chr1 (153-216)||(42601610-42601673)
chr1 (248-351)||(42601686-42601789)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 36630851 - 36630498
Alignment:
Q  1 aggtgcagccgaggcagatgccgcggcagaagcaggagcaaaagcagactca---gcacaagcaggtgcaacaaagaaagaggcaggcgtggtaacttgt 97  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||| || ||||    
T  36630851 aggtgcagccgaggcagacgccacggcagaagcaggagcaaaagcagactcatcagcacaagcaggtgcaacagagaaagaggcaggcgtggcaatttgt 36630752  T
Q  98 gagcgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcattta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36630751 gagcgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcattta 36630652  T
Q  198 aaattatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaa 297  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36630651 aaattatctaagcttagattgtcaaaaaaataattaccacacttggctcccttatgacttttaaataactacctgcttaagattaaaacaacctgggtaa 36630552  T
Q  298 tttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaact 351  Q
    | |||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  36630551 tctgttgtgatgttaacttcagccgacgacgggttttgtcgcaagaagtcaact 36630498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 101 - 347
Target Start/End: Original strand, 36642258 - 36642494
Alignment:
Q  101 cgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaa 200  Q
    |||||| |||| |||||  | ||||||||||||||| ||||||| |||||||       ||| |||||||||||||||||||||| |||||||||| |||    
T  36642258 cgatagctgatgatcttagcgccctttatagattctacaacctgcttagtaa-------caaacaatcacaaactcttcttatggttgtttcatttgaaa 36642350  T
Q  201 ttatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaattt 300  Q
     |||||||||| ||||| ||        ||||||||||||  |||||||||||  ||||||||||| ||||||||||||||||||||| | | ||||| |    
T  36642351 ctatctaagctgagattctcaaaag---aattaccacactcagctcccttatggattttaaataacaacctgcttaagattaaaacaatccgagtaatct 36642447  T
Q  301 gttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc 347  Q
    || | |||||||||||| || |||| || |||||||| |||||||||    
T  36642448 gtaaagatgttaacttccgcagacggtgagttttgtcgcaagaagtc 36642494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 351
Target Start/End: Complemental strand, 36910978 - 36910737
Alignment:
Q  106 gttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatc 205  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||       |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  36910978 gttgataatcttcgcgccctttatagattctacaacctgtttagtaa-------caaccaattacaaactcttcttatggttgtgtcatttaaaattatc 36910886  T
Q  206 taagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataa----ctacctgcttaagattaaaacaacctgggtaatttg 301  Q
    |||||| ||||| ||        ||||| ||||||  |||||| |||| |||||||||||    |||||||||||||||||||| ||     ||||| ||    
T  36910885 taagctcagattctcaacaaaa-aattaacacactcagctcccatatggtttttaaataactagctacctgcttaagattaaaataaataaagtaatctg 36910787  T
Q  302 ttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaact 351  Q
    || ||||||||||||| || || |  | |||||||| |||||||||||||    
T  36910786 ttgtgatgttaacttccgctgagggcgagttttgtcgcaagaagtcaact 36910737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 317
Target Start/End: Original strand, 36635595 - 36635804
Alignment:
Q  102 gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat 201  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| |        |||||||||||||||||||   || | |||||||||||||||    
T  36635595 gatagttgataaccttcgcaccctttatagattcttcaacctgtttagcag-------caaccaatcacaaactctt---atcgttgtttcatttaaaat 36635684  T
Q  202 tatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttt-----taaataactacctgcttaagattaaaacaacctgggta 296  Q
    |||||||||||||||| ||        ||| | |||| |  | | |||||||||||      |||||||||||||||||||||||||||||| | |||||    
T  36635685 tatctaagcttagattctcaaaaaaaaaat-atcacattcagtttccttatgatttgatttataaataactacctgcttaagattaaaacaagccgggta 36635783  T
Q  297 atttgttatgatgttaacttc 317  Q
    ||||||| |||||||||||||    
T  36635784 atttgttgtgatgttaacttc 36635804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 285
Target Start/End: Complemental strand, 18365703 - 18365469
Alignment:
Q  43 agcagactcagcacaagcaggtgcaacaaagaaagaggcaggcgtggtaacttgtgagcgatagttgataatcttctcaccctttatagattcttcaacc 142  Q
    ||||||||||||| |||||||||| ||| || ||| ||||| ||  | || ||||||  | ||| || | |||||| | |||||||| ||||||||||||    
T  18365703 agcagactcagcagaagcaggtgcgacagaggaaggggcagacgcagaaaattgtgaatggtagctggtcatcttcgctccctttatggattcttcaacc 18365604  T
Q  143 tgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttg 242  Q
    ||||||||||       |||||||||||||||||||||||||| ||||  |||| || ||||| ||||| ||||| ||        |||||||||||| |    
T  18365603 tgtttagtaa-------caaccaatcacaaactcttcttatggttgttaaatttgaatttatcaaagctcagattctcaaaaaaa-aattaccacactcg 18365512  T
Q  243 gctcccttatgatttttaaataactacctgcttaagattaaaa 285  Q
    | | ||||||| ||||||||||||||||||||| | |||||||    
T  18365511 gttaccttatggtttttaaataactacctgcttgatattaaaa 18365469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 36597222 - 36597455
Alignment:
Q  43 agcagactcagcacaagcaggtgcaacaaagaaagaggcaggcgtggtaacttgtgagcgatagttgataatcttctcaccctttatagattcttcaacc 142  Q
    ||||||||||||| |||||||||| ||| || ||| ||||| ||  | || ||||||  | ||| || | |||||| | |||||||| ||||||||||||    
T  36597222 agcagactcagcagaagcaggtgcgacagaggaaggggcagacgcagaaaattgtgaatggtagctggtcatcttcgctccctttatggattcttcaacc 36597321  T
Q  143 tgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttg 242  Q
    ||||||||||       |||||||||||||||||||||||||| ||||  |||| || ||||| ||||| ||||| ||        |||||||||||| |    
T  36597322 tgtttagtaa-------caaccaatcacaaactcttcttatggttgttaaatttgaatttatcaaagctcagattctcaaaaaa--aattaccacactcg 36597412  T
Q  243 gctcccttatgatttttaaataactacctgcttaagattaaaa 285  Q
    | | ||||||| ||||||||||||||||||||| | |||||||    
T  36597413 gttaccttatggtttttaaataactacctgcttgatattaaaa 36597455  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 35969610 - 35969502
Alignment:
Q  243 gctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaag 342  Q
    |||| |||||| |||| |||||||||||| ||||||||||||||||  || |||| |||||| |||||||||||| |||  || || |||||||| ||||    
T  35969610 gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag 35969511  T
Q  343 aagtcaact 351  Q
    || ||||||    
T  35969510 aaatcaact 35969502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 284
Target Start/End: Complemental strand, 18361441 - 18361271
Alignment:
Q  102 gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat 201  Q
    |||| |||||||| ||  |||||||||||||||| |||||||||||||||||       |||||||||||||   ||||||||| |||||||||  ||||    
T  18361441 gataattgataatatttgcaccctttatagattcctcaacctgtttagtaat-------aaccaatcacaaa---ttcttatggttgtttcatt--aaat 18361354  T
Q  202 tatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaa 284  Q
    || ||||||| |||||           ||||| ||||||  ||||||||||| |||| |||||||||| ||||||||||||||    
T  18361353 tagctaagctgagattcgagaaaaaaaaattaacacactcagctcccttatggttttcaaataactacttgcttaagattaaa 18361271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 18084480 - 18084429
Alignment:
Q  101 cgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaa 152  Q
    |||||| |||| |||||| ||||||||||||||||| |||||||||||||||    
T  18084480 cgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaa 18084429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 36664529 - 36664580
Alignment:
Q  101 cgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaa 152  Q
    |||||| |||| |||||| ||||||||||||||||| |||||||||||||||    
T  36664529 cgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaa 36664580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 36601486 - 36601589
Alignment:
Q  102 gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat 201  Q
    |||| |||||||| ||  |||||||||||||||| |||||||||||||||||       |||||||||||||   ||||||||| |||||||||  ||||    
T  36601486 gataattgataatatttgcaccctttatagattcctcaacctgtttagtaat-------aaccaatcacaaa---ttcttatggttgtttcatt--aaat 36601573  T
Q  202 tatctaagcttagatt 217  Q
    || ||||||| |||||    
T  36601574 tagctaagctgagatt 36601589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 36601608 - 36601657
Alignment:
Q  235 cacacttggctcccttatgatttttaaataactacctgcttaagattaaa 284  Q
    ||||||  ||||||||||| |||| |||||||||| ||||||||||||||    
T  36601608 cacactcagctcccttatggttttcaaataactacttgcttaagattaaa 36601657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 18084361 - 18084309
Alignment:
Q  229 aattaccacacttggctcccttatgatttttaaataactacctgcttaagatt 281  Q
    |||||||||||   ||||||||| |||||||||||| ||||||||||| ||||    
T  18084361 aattaccacacacagctcccttaagatttttaaatacctacctgcttaggatt 18084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 36664648 - 36664700
Alignment:
Q  229 aattaccacacttggctcccttatgatttttaaataactacctgcttaagatt 281  Q
    |||||||||||   ||||||||| |||||||||||| ||||||||||| ||||    
T  36664648 aattaccacacacagctcccttaagatttttaaatacctacctgcttaggatt 36664700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 35337047 - 35336944
Alignment:
Q  248 cttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc 347  Q
    |||||| |||||||| |||||||||||||| ||||||| |||| | ||| |||||| ||||||||||||  ||||||| || |||||||  |||||||||    
T  35337047 cttatggtttttaaacaactacctgcttaatattaaaataacccgtgtactttgttgtgatgttaactttcgccgacggtgagttttgttgcaagaagtc 35336948  T
Q  348 aact 351  Q
    ||||    
T  35336947 aact 35336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 42601610 - 42601673
Alignment:
Q  153 ttagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatctaagcttagat 216  Q
    |||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  42601610 ttagtaacaaccaatcacaaactcttcttatggttgtttcatttgaaattatctaagctcagat 42601673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 42601686 - 42601789
Alignment:
Q  248 cttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc 347  Q
    |||||| |||||||||||||||||||||||||| |||| |||  ||||||| ||||| ||| ||||||||  ||||||    |||||||| |||||| ||    
T  42601686 cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc 42601785  T
Q  348 aact 351  Q
    ||||    
T  42601786 aact 42601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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