View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_12 (Length: 372)
Name: NF10119_low_12
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_12 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 1058819 - 1059166
Alignment:
| Q |
17 |
aaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058819 |
aaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatg |
1058918 |
T |
|
| Q |
117 |
atgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1058919 |
atgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgc |
1059018 |
T |
|
| Q |
217 |
tcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059019 |
tcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagc |
1059118 |
T |
|
| Q |
317 |
atcaaagtgtggaatctcttcactaaataagttcaatacccctttgct |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059119 |
atcaaagtgtggaatctcttcactaaataagttcaatacccctttgct |
1059166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 1071640 - 1071981
Alignment:
| Q |
19 |
aactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgat |
118 |
Q |
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||||||| ||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
1071640 |
aactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgat |
1071739 |
T |
|
| Q |
119 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctc |
218 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1071740 |
gggatcaatgccatagctgaaaacagggcagacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctc |
1071839 |
T |
|
| Q |
219 |
ctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcat |
318 |
Q |
| |
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||||||||||||||||||||| |||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||| |
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| T |
1071840 |
ctctaaacaagtataacagggagacattttacgtttctgatccagttctaggttatactgactacccttttcttgaatgaaggaaccggtgctgtagcat |
1071939 |
T |
|
| Q |
319 |
caaagtgtggaatctcttcactaaataagttcaatacccctt |
360 |
Q |
| |
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| |||||||||||||| |||||||||||| ||| || ||||| |
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| T |
1071940 |
ccaagtgtggaatctcctcactaaataaggtcattatccctt |
1071981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 1065911 - 1066254
Alignment:
| Q |
17 |
aaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatg |
116 |
Q |
| |
|
||||||||| ||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
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| T |
1065911 |
aaaactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatg |
1066010 |
T |
|
| Q |
117 |
atgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgc |
216 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
1066011 |
atgggatcaatgccatagctgaaaacagggcagaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgc |
1066110 |
T |
|
| Q |
217 |
tcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagc |
316 |
Q |
| |
|
|||||| ||||| |||||||||| ||| ||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||| |
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|
| T |
1066111 |
tcctctgaacaaatataacagggagacgttctacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaactgatgctgtagc |
1066210 |
T |
|
| Q |
317 |
atcaaagtgtggaatctcttcactaaataagttcaatacccctt |
360 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||| || ||||| |
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| T |
1066211 |
atccaagtgtggaatctcctcactaaataagttcattatccctt |
1066254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 35 - 314
Target Start/End: Original strand, 1033927 - 1034206
Alignment:
| Q |
35 |
attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag |
134 |
Q |
| |
|
|||||| || || |||| || ||||| ||||||||||| ||||| || |||||| ||| ||| |||||||| ||| || | |||||||||||||| |||| |
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|
| T |
1033927 |
attgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatag |
1034026 |
T |
|
| Q |
135 |
ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataa |
234 |
Q |
| |
|
| || |||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || || ||||| |
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| T |
1034027 |
cagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataa |
1034126 |
T |
|
| Q |
235 |
cagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
314 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| |||||||||| ||||| || ||||||||||||||||| || ||||||| |
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| T |
1034127 |
cagggagacattctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgta |
1034206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 35 - 314
Target Start/End: Original strand, 1044314 - 1044593
Alignment:
| Q |
35 |
attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag |
134 |
Q |
| |
|
|||||| || || |||| || ||||| ||||||||||| ||||| ||| ||||| ||||||||||||| || ||| || | || |||||| |||| |||| |
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|
| T |
1044314 |
attgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatag |
1044413 |
T |
|
| Q |
135 |
ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaacaagtataa |
234 |
Q |
| |
|
||||||| | | |||| ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
1044414 |
ctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataa |
1044513 |
T |
|
| Q |
235 |
cagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
314 |
Q |
| |
|
|||| ||||||||||| ||| ||||| ||| | ||||| |||||||| || ||||||||||||||||| || ||||||| |
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| T |
1044514 |
tagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgta |
1044593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 116 - 296
Target Start/End: Original strand, 1053653 - 1053833
Alignment:
| Q |
116 |
gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg |
215 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| || ||||||||||||| || ||||||||||||||| ||| |
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|
| T |
1053653 |
gatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatg |
1053752 |
T |
|
| Q |
216 |
ctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaat |
296 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1053753 |
ctcctcttaacaagtataatagggagacattctacacttctgatccagttataggttatactgactacccttctcttgaat |
1053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 119 - 304
Target Start/End: Original strand, 1046984 - 1047169
Alignment:
| Q |
119 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctc |
218 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||||||| || | ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
1046984 |
gggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctc |
1047083 |
T |
|
| Q |
219 |
ctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaac |
304 |
Q |
| |
|
| |||||||||||||| | || |||||||| |||||| ||||||||| | |||||||| |||||||||||||||||||||| |||| |
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|
| T |
1047084 |
ccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactacccttttcttgaatgaataaac |
1047169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 116 - 293
Target Start/End: Complemental strand, 1640548 - 1640371
Alignment:
| Q |
116 |
gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatg |
215 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||| ||||||| |||||||| ||||| || ||||||||||||| || |||||||| || || |||| |
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|
| T |
1640548 |
gatgggattgatgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatg |
1640449 |
T |
|
| Q |
216 |
ctcctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttg |
293 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||| || ||||| ||| | |||||||| |||||||||||||||| |
|
|
| T |
1640448 |
ctcctctcaacaagtataaccgggaaacattctacacatctgatccggttctcggttatacagactacccttttcttg |
1640371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 65854 - 65937
Alignment:
| Q |
125 |
aatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
208 |
Q |
| |
|
||||| ||||| ||||||| | |||| |||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||| |
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| T |
65854 |
aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 12121399 - 12121338
Alignment:
| Q |
147 |
cagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
208 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
12121399 |
cagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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