View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10119_low_13 (Length: 366)

Name: NF10119_low_13
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10119_low_13
NF10119_low_13
[»] chr2 (3 HSPs)
chr2 (14-350)||(21186378-21186716)
chr2 (267-323)||(14268735-14268791)
chr2 (267-309)||(37232156-37232198)
[»] chr3 (8 HSPs)
chr3 (14-141)||(8335719-8335846)
chr3 (150-350)||(8335300-8335507)
chr3 (267-325)||(47542534-47542592)
chr3 (267-316)||(18268007-18268056)
chr3 (269-318)||(21768612-21768661)
chr3 (267-311)||(47542767-47542811)
chr3 (267-311)||(47542986-47543030)
chr3 (267-311)||(47556433-47556477)
[»] chr5 (7 HSPs)
chr5 (266-325)||(15086697-15086756)
chr5 (265-328)||(15086628-15086691)
chr5 (268-324)||(9895147-9895203)
chr5 (260-310)||(10392909-10392959)
chr5 (160-211)||(15086832-15086884)
chr5 (272-328)||(16274347-16274402)
chr5 (267-311)||(28322254-28322298)
[»] chr4 (4 HSPs)
chr4 (274-324)||(843150-843200)
chr4 (265-308)||(54779167-54779210)
chr4 (272-324)||(3587920-3587972)
chr4 (267-323)||(16010710-16010766)
[»] chr6 (6 HSPs)
chr6 (265-324)||(22745545-22745604)
chr6 (270-321)||(32577469-32577520)
chr6 (267-311)||(6074526-6074570)
chr6 (273-316)||(6074035-6074078)
chr6 (280-316)||(6073755-6073791)
chr6 (266-338)||(10307474-10307546)
[»] chr7 (1 HSPs)
chr7 (271-316)||(20204247-20204292)
[»] scaffold0330 (1 HSPs)
scaffold0330 (271-328)||(4350-4407)
[»] chr8 (1 HSPs)
chr8 (269-326)||(3066040-3066097)
[»] scaffold0016 (1 HSPs)
scaffold0016 (267-311)||(47336-47380)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 21186378 - 21186716
Alignment:
Q  14 atcataatcagattatagaaaaatcacaattggaatcacaatcagtaggagaaaattaa-taaatcaaagtacaaaagatcacaatcagaaaccccaact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21186378 atcataatcagattatagaaaaatcacaattggaatcacaatcagtaggagaaaattaaataaatcaaagtacaaaagatcacaatcagaaaccccaact 21186477  T
Q  113 taacatgtgcttaccaaatcaatagagaactgcaaataaaatcctttggtttttattttcatatccaaaatacgtgttgtttatgaattgtccc-aatgg 211  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21186478 taacatgtgcttaccaaatcaatacagaacagcaaaaaaaatcctttggtttttattttcatatccaaaatacgtgttgtttatgaattgtccccaatgg 21186577  T
Q  212 aacctctgaagatctctgaagcaccgacacctttgatcaagagtgtcgatgtttgacaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21186578 aacctctgaagatctctgaagcaccgacacctttgatcaagagtgtcgatgtttgacaccgacacatgtgattacgttcaaataattcactttctcaaat 21186677  T
Q  312 cattaccggtgtcaatgagttagtgtctgagacataact 350  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  21186678 cattaccggtgtcaacgagttagtgtctgggacataact 21186716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 14268735 - 14268791
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgt 323  Q
    |||||||||||| | ||||||||||| ||| ||| |||||||||| |||||||||||    
T  14268735 acaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgt 14268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 37232156 - 37232198
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaa 309  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||    
T  37232156 acaccgacacatgtgattatgttcaaataattcattttatcaa 37232198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 8335846 - 8335719
Alignment:
Q  14 atcataatcagattatagaaaaatcacaattggaatcacaatcagtaggagaaaattaataaatcaaagtacaaaagatcacaatcagaaaccccaactt 113  Q
    |||| ||||||| ||||||||||| |||||  ||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  8335846 atcacaatcagaatatagaaaaattacaatctgaatcacaatccgtaggagaaaattaataaatcaaaatacaaaaaatcacaaacagaaaccccaactt 8335747  T
Q  114 aacatgtgcttaccaaatcaatagagaa 141  Q
    ||||||||||||||||||||| ||||||    
T  8335746 aacatgtgcttaccaaatcaacagagaa 8335719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 350
Target Start/End: Complemental strand, 8335507 - 8335300
Alignment:
Q  150 aaaatcctttggtttttattttcatatccaaaatacgtgttgtttatgaattgt-cccaatggaacctc-----tgaagatctctgaagcaccgacacct 243  Q
    ||||| |||||| |||||||||||||||||||||| ||| | || ||||||||| ||||||||||||||     ||||||||| ||||| ||| ||||||    
T  8335507 aaaatgctttggattttattttcatatccaaaatatgtgcttttaatgaattgtacccaatggaacctcgcctttgaagatctttgaagtaccaacacct 8335408  T
Q  244 ttgatcaagagtgtc-gatgtttgacaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtcaatgagttagtgtctgag 342  Q
    ||||||||| ||||| | | |  |||||| ||||| ||||||| |||||||||||||||||| | |||| |||||||||||||| |||||| |||| | |    
T  8335407 ttgatcaagtgtgtccggtatccgacacccacacaagtgattatgttcaaataattcactttataaaattattaccggtgtcaacgagttaatgtcggtg 8335308  T
Q  343 acataact 350  Q
    ||||||||    
T  8335307 acataact 8335300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 47542592 - 47542534
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtca 325  Q
    |||||||||||||||||||| |||||||| |||| |||||||||| |||||| ||||||    
T  47542592 acaccgacacatgtgattacattcaaatagttcattttctcaaattattaccagtgtca 47542534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 18268007 - 18268056
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaatcatta 316  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 21768661 - 21768612
Alignment:
Q  269 accgacacatgtgattacgttcaaataattcactttctcaaatcattacc 318  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||||    
T  21768661 accgacacatgtggttacgttcaaataattcattttctcaaattattacc 21768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 47542811 - 47542767
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||    
T  47542811 acaccgacacatgtgattacattcaaataattcattatctcaaat 47542767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 47543030 - 47542986
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||    
T  47543030 acaccgacacatgtgattacattcaaataattcattatctcaaat 47542986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 47556477 - 47556433
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||    
T  47556477 acaccgacacatgtgattacattcaaataattcattatctcaaat 47556433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 15086756 - 15086697
Alignment:
Q  266 gacaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtca 325  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  15086756 gacaccaacacatgtgattacgttcaaataattcactttctcaaattattacccgtgtca 15086697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 15086691 - 15086628
Alignment:
Q  265 tgacaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtcaatg 328  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||| ||||  ||||||||||    
T  15086691 tgacacccacacatgtgattacgtgcaaataattaactttctcaaattattattggtgtcaatg 15086628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 9895203 - 9895147
Alignment:
Q  268 caccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtc 324  Q
    |||| |||||||||||||||||||||||||| | |||||||||| ||||| ||||||    
T  9895203 caccaacacatgtgattacgttcaaataatttattttctcaaattattactggtgtc 9895147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 10392909 - 10392959
Alignment:
Q  260 atgtttgacaccgacacatgtgattacgttcaaataattcactttctcaaa 310  Q
    |||| |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  10392909 atgtctgacaccgacacatctgagtacgttcaaataattcattttctcaaa 10392959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 15086884 - 15086832
Alignment:
Q  160 ggtttttattttcatatccaaaatacgtgttgtttatgaattg-tcccaatgg 211  Q
    ||||||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  15086884 ggtttttattttcatatccaaaccacgtgctgtttatgaattgttcccaatgg 15086832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 16274347 - 16274402
Alignment:
Q  272 gacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtcaatg 328  Q
    ||||||||||||||| ||||| ||||||| ||||||||||  |||| ||||||||||    
T  16274347 gacacatgtgattacattcaattaattca-tttctcaaatttttactggtgtcaatg 16274402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 28322298 - 28322254
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    ||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  28322298 acaccaacacatgtgattacattcaattaattcattttctcaaat 28322254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 843150 - 843200
Alignment:
Q  274 cacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtc 324  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  843150 cacatgtgattacgttcaaataattcattttctcaaattattaccagtgtc 843200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 54779210 - 54779167
Alignment:
Q  265 tgacaccgacacatgtgattacgttcaaataattcactttctca 308  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  54779210 tgacactgacacatgtgattacgttcaaataattcattttctca 54779167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 3587972 - 3587920
Alignment:
Q  272 gacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtc 324  Q
    |||||||||| |||| |||||||| ||||||||||||||| ||| ||||||||    
T  3587972 gacacatgtggttacattcaaatatttcactttctcaaattattgccggtgtc 3587920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 16010766 - 16010710
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgt 323  Q
    ||||| |||||||||||| ||||||||| ||| | |||||||||| ||||| |||||    
T  16010766 acacctacacatgtgattgcgttcaaatgatttattttctcaaattattactggtgt 16010710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 22745545 - 22745604
Alignment:
Q  265 tgacaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtc 324  Q
    |||||| || |||||| |||||||| |||||||||| ||||||||||||||||| |||||    
T  22745545 tgacactgaaacatgtcattacgtttaaataattcattttctcaaatcattaccagtgtc 22745604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 32577469 - 32577520
Alignment:
Q  270 ccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggt 321  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||    
T  32577469 ccgacacatgtgattacattcaattaattcattttctcaaatcatcaccggt 32577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 6074570 - 6074526
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  6074570 acaccaacacatgtgattacgttcaactaattcattttctcaaat 6074526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 6074078 - 6074035
Alignment:
Q  273 acacatgtgattacgttcaaataattcactttctcaaatcatta 316  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||    
T  6074078 acacatatgattacgttcaaataattcattttctcaaattatta 6074035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 6073791 - 6073755
Alignment:
Q  280 tgattacgttcaaataattcactttctcaaatcatta 316  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  6073791 tgattacgttcaaataattcattttctcaaattatta 6073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 10307546 - 10307474
Alignment:
Q  266 gacaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtcaatgagttagtgtc 338  Q
    ||||||||||||||||| ||| |||||  | |||||||||| |||| |||| ||| ||||||| || ||||||    
T  10307546 gacaccgacacatgtgactacattcaacaagttcactttcttaaattattatcggagtcaatgtgtcagtgtc 10307474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 20204292 - 20204247
Alignment:
Q  271 cgacacatgtgattacgttcaaataattcactttctcaaatcatta 316  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||    
T  20204292 cgacacatgtgattacgttcaaatgattcattttctcaaattatta 20204247  T

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Target: scaffold0330 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 4407 - 4350
Alignment:
Q  271 cgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtcaatg 328  Q
    ||||||||||||||  ||| |||||||||| |||||||||| |||| | |||||||||    
T  4407 cgacacatgtgattgtgtttaaataattcattttctcaaattattagcagtgtcaatg 4350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 3066097 - 3066040
Alignment:
Q  269 accgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtcaa 326  Q
    |||||||||||| ||||| ||||| |||| || |||||||||| |||||| |||||||    
T  3066097 accgacacatgttattacattcaattaatccattttctcaaattattacctgtgtcaa 3066040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 47380 - 47336
Alignment:
Q  267 acaccgacacatgtgattacgttcaaataattcactttctcaaat 311  Q
    ||||||||||||||| |||||||||| |||| || ||||||||||    
T  47380 acaccgacacatgtgtttacgttcaattaatacattttctcaaat 47336  T

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