View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_15 (Length: 343)
Name: NF10119_low_15
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 38014379 - 38014642
Alignment:
| Q |
16 |
actttgcaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgcttt |
115 |
Q |
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| T |
38014379 |
actttacaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatatcagccattgattgcttt |
38014478 |
T |
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| Q |
116 |
ttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaatt |
215 |
Q |
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| T |
38014479 |
ttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttattgttatttgacttgcacggttcaaccacattggtttgaaatt |
38014578 |
T |
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| Q |
216 |
caaatttcttctcttccatattccaatggtgcattaaatgtgtgtatcaaacccaatatgatatctt |
282 |
Q |
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| T |
38014579 |
caaatttc--ctcttccatattccaatggcgcattaaatgtgtgtatcaaa-ccaatatgatatctt |
38014642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 31413335 - 31413063
Alignment:
| Q |
37 |
gatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgctttttaacgcttgattaca--cac |
134 |
Q |
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| T |
31413335 |
gatttttaggcgccaaaatattgtggccgttagatcaatctatttgggtgcctggaacatatcagccattgattgctttttaacgcttgattacacacac |
31413236 |
T |
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| Q |
135 |
atcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaattcaaatttcttctcttccat |
234 |
Q |
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| T |
31413235 |
atcaatgctagatgttaatgctgggttaattgcatttactcttatttgacttgcacggttc-accacattggtttgaaattcaaattt-tccccttccat |
31413138 |
T |
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| Q |
235 |
attccaatggtgcattaaatgtgtgtatcaaacccaatatgatatcttgctccacatgatcatatctttctcaaaa |
310 |
Q |
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| T |
31413137 |
attccaatggtgcattaaatgtgtgtatcaaa-ccaatatgatatcttgctccacatgatcatatctttctcaaaa |
31413063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 2769789 - 2769822
Alignment:
| Q |
268 |
ccaatatgatatcttgctccacatgatcatatct |
301 |
Q |
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| T |
2769789 |
ccaataagatatcttgctccacatgatcatatct |
2769822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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