View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10119_low_15 (Length: 343)

Name: NF10119_low_15
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10119_low_15
NF10119_low_15
[»] chr4 (1 HSPs)
chr4 (16-282)||(38014379-38014642)
[»] chr2 (1 HSPs)
chr2 (37-310)||(31413063-31413335)
[»] chr8 (1 HSPs)
chr8 (268-301)||(2769789-2769822)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 38014379 - 38014642
Alignment:
Q  16 actttgcaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgcttt 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  38014379 actttacaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatatcagccattgattgcttt 38014478  T
Q  116 ttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38014479 ttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttattgttatttgacttgcacggttcaaccacattggtttgaaatt 38014578  T
Q  216 caaatttcttctcttccatattccaatggtgcattaaatgtgtgtatcaaacccaatatgatatctt 282  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  38014579 caaatttc--ctcttccatattccaatggcgcattaaatgtgtgtatcaaa-ccaatatgatatctt 38014642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 31413335 - 31413063
Alignment:
Q  37 gatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgctttttaacgcttgattaca--cac 134  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||  |||    
T  31413335 gatttttaggcgccaaaatattgtggccgttagatcaatctatttgggtgcctggaacatatcagccattgattgctttttaacgcttgattacacacac 31413236  T
Q  135 atcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaattcaaatttcttctcttccat 234  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||    
T  31413235 atcaatgctagatgttaatgctgggttaattgcatttactcttatttgacttgcacggttc-accacattggtttgaaattcaaattt-tccccttccat 31413138  T
Q  235 attccaatggtgcattaaatgtgtgtatcaaacccaatatgatatcttgctccacatgatcatatctttctcaaaa 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31413137 attccaatggtgcattaaatgtgtgtatcaaa-ccaatatgatatcttgctccacatgatcatatctttctcaaaa 31413063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 2769789 - 2769822
Alignment:
Q  268 ccaatatgatatcttgctccacatgatcatatct 301  Q
    |||||| |||||||||||||||||||||||||||    
T  2769789 ccaataagatatcttgctccacatgatcatatct 2769822  T

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