View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_16 (Length: 337)
Name: NF10119_low_16
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 332
Target Start/End: Original strand, 43938842 - 43939150
Alignment:
| Q |
24 |
aacgaaatagtgtttcaatcagtattgattcttgttctttgctgtgttggtctttatttcgcagtatgggaattaccagaggaaaatacttgaagaggac |
123 |
Q |
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| T |
43938842 |
aacgaaatagtgtttcaatcagtattgattcttgttctttgttgtgttggtctttatttcgcagtatgggaattaccagaggaaaatacttgaagaggac |
43938941 |
T |
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| Q |
124 |
ttgaacaagaaatggaatcgtatcatagtcaatacttcggtatgtttttcactctaattgtctctttgtcatttcatgaatgagcttttatgatgtttat |
223 |
Q |
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| T |
43938942 |
ttgaacaagaaatggaatcgtatcatagtcaatacttcggtatgtttttcactctaattgtctctttggcatttcatgaatgagcttttatgatgtttat |
43939041 |
T |
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| Q |
224 |
ttcaacttattttctttgtacattatagcctgtcacaccattggaacaatgtgagtggttgaatctattgttgtcacaaatctggtccaattattttaat |
323 |
Q |
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| T |
43939042 |
ttcaacttattttctttgtacattatagcctgtcacaccattggaacaatgtgagtggttgaatctattgttgtcacaaatctggtccaattattttaat |
43939141 |
T |
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| Q |
324 |
cctatgctt |
332 |
Q |
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|||| |||| |
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| T |
43939142 |
cctaagctt |
43939150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 31580057 - 31580135
Alignment:
| Q |
247 |
tatagcctgtcacaccattggaacaatgtgagtggttgaatctattgttgtcacaaatctggtccaattattttaatcc |
325 |
Q |
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| T |
31580057 |
tatagcccatcacaccattggagcactgtgaatggctgaataaattgttgacagaaatctggcccaactattttaatcc |
31580135 |
T |
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