View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_18 (Length: 313)
Name: NF10119_low_18
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_18 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 29373341 - 29373048
Alignment:
| Q |
17 |
tcaggataatatattaacataagcccgacacaagacatg--aaacggtgaggcaacgaaattctatggaccctaaaggcaatgccagccgcagcacacag |
114 |
Q |
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|||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29373341 |
tcagcataatatattaacacaagcccggcacaagacatgctaaacggtgaggcaacgaaactctatggaccctaaaggcaatgccagccgcagcacacag |
29373242 |
T |
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| Q |
115 |
actcaccatagcagaaaaaacaacaac--ccctgccactctgctggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagagacgaa |
212 |
Q |
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| T |
29373241 |
acacaccatagcagaaaaatcaacagtggccctgccactctgctggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagagacgaa |
29373142 |
T |
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| Q |
213 |
aactccactacctcctcagtcactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaaagtcctatgcta |
306 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29373141 |
aactccactacctcctcagtcactctctcaggttccaacaccactcataaaagaggccataaacaatcttcaatctactcaaagtccaatgcta |
29373048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 10643011 - 10642960
Alignment:
| Q |
157 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
208 |
Q |
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| T |
10643011 |
ggaccagcagccaacaacaccaatcagacaccaaaacagacccaaacagaga |
10642960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 32712827 - 32712878
Alignment:
| Q |
157 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
208 |
Q |
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| T |
32712827 |
ggaccagcagccaacaacaccaatcgaacaccaaaacagacccaaacagaga |
32712878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 11682018 - 11682133
Alignment:
| Q |
78 |
tatggaccctaaaggcaatgccagccgcagcacacagactcaccatagcagaaaaaacaacaacc-cctgccact-ctgctggaccagcagccaacaaac |
175 |
Q |
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| T |
11682018 |
tatggaccctaaaggcaatcccagccgaggcaca--gacaaaccatagcagaaaaaccaacattggcctgctacaactgctgaaccagcagccaacaata |
11682115 |
T |
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| Q |
176 |
ccaatcggacaccaaaac |
193 |
Q |
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| T |
11682116 |
ccaatcggacaccaaaac |
11682133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 3585 - 3534
Alignment:
| Q |
157 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
208 |
Q |
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| T |
3585 |
ggaccagcagccaacaacaccaatcggacaccaaaacagacccaaacagaga |
3534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 23923638 - 23923689
Alignment:
| Q |
157 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
208 |
Q |
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| T |
23923638 |
ggaccagcagccaacaacgccaatcggacaccaaaacagacccaaacagaga |
23923689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 23923520 - 23923561
Alignment:
| Q |
152 |
ctgctggaccagcagccaacaaacccaatcggacaccaaaac |
193 |
Q |
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| T |
23923520 |
ctgctggaccagcagccaacaacaccaattggacaccaaaac |
23923561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 17257131 - 17257070
Alignment:
| Q |
233 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaa |
294 |
Q |
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|||||||| |||||||||||||||| |||||||||| | || |||||||||| |||||||| |
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| T |
17257131 |
cactcccttgggttccaacaccactcgtaaaagaggcaagaagcaatcttcaacctactcaa |
17257070 |
T |
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