View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_2 (Length: 963)
Name: NF10119_low_2
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 35 - 413
Target Start/End: Original strand, 46931655 - 46932033
Alignment:
| Q |
35 |
tggctgagctgcagaaatcattagcatcattcaggagacaaggttcatcaggattggtttgggatgataaattcttgtctggtttgaatcagaatcaact |
134 |
Q |
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| T |
46931655 |
tggctgagctgcagaaatcattagcatcattcaggagacaaggttcatcaggattggtttgggatgataaattcttgtctggtttgaatcagaatcaact |
46931754 |
T |
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| Q |
135 |
agaacaagagagtgcatcaactggcacgttggagagaagcagatcagctggagcaagaccatatcgatcggtcaacgttgcaccaacatcaattgaccca |
234 |
Q |
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| T |
46931755 |
agaacaagagagtgcatcaactggtacgttggagagaagcagatcagctggagcaagaccatatcgatcggtcaacgttgcaccaacatcaattgaccca |
46931854 |
T |
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| Q |
235 |
ccttctcctaaggttgcaacatgtggtttttgtggtttgtttggtaaaccagttgctgcttcttcaacacataaatcaaataatcccaaatcaagaaaaa |
334 |
Q |
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| T |
46931855 |
ccttctcctaaggttgcaacatgtggtttttgtggtttgtttggtaaaccagttgctgcttcttcagcacataaatcaaataatcccaaatcaagaaaaa |
46931954 |
T |
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| Q |
335 |
gaagatcatgatcatccttaatctcttggtggtggtaattctccaacttgtatgtaaattagttcttaaatcttgatca |
413 |
Q |
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| T |
46931955 |
gaagatcatgatcatccttaatctcttggtggtggtaattatccaacttgtatgtaaattagttcttaaatcttgatca |
46932033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 636 - 942
Target Start/End: Original strand, 46932219 - 46932509
Alignment:
| Q |
636 |
tttcgtgtgttgataattttccaattaatcgcaatttcaatagacctttttacttttagagttccttcactttttgtctcaaatgattatctagctagat |
735 |
Q |
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| T |
46932219 |
tttcgtgtgttgataattttccaattaatcgcaatttcaatagacctttttacttttagagttccttcactttttgtctcaattgattatctagataga- |
46932317 |
T |
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| Q |
736 |
acactttcgtaataattaaagtgttgtcaactacgtttgtaaatgttagatacactttttgtcgnnnnnnntgttaggatacccttctcgtctcaattat |
835 |
Q |
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| T |
46932318 |
---ctttcgtaataattaaagtgtt------------tgtaaatgttagatacactttttgtcgaaaaaaatgttaggatacgcttctcgtctcaattat |
46932402 |
T |
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| Q |
836 |
ccagcttgtctcaactgaatgataatcttgaattcgaaaattctaacattttttaggtagaattctgtcgttcatgtcgtttatctggctagaaaatagt |
935 |
Q |
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| T |
46932403 |
ccagcttgtctcaactgaatgataatcttgaattcgaaaatcctaacattttttaggtggaattctgtcgttcatgtcgtttatctggctagaaaatagt |
46932502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 476 - 579
Target Start/End: Original strand, 46932108 - 46932213
Alignment:
| Q |
476 |
ggtgttaaattgtgtaaattcgtagaacatatggatgtactatctccgtgtgaaataaggtttgctcaaattttgtctc--agattttggtttagagttc |
573 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46932108 |
ggtgttaaattgtgtaaattcgtagaacatatggatgtactatctccgtgtgaaataaggtttgctcaaattttgtctcaaagattttggtttagagttc |
46932207 |
T |
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| Q |
574 |
caagct |
579 |
Q |
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|||||| |
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| T |
46932208 |
caagct |
46932213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 44510317 - 44510360
Alignment:
| Q |
60 |
atcattcaggagacaaggttcatcaggattggtttgggatgata |
103 |
Q |
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| T |
44510317 |
atcattcagaagacaaggttcatcagggtttgtttgggatgata |
44510360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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