View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_23 (Length: 255)
Name: NF10119_low_23
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8438940 - 8439174
Alignment:
| Q |
1 |
ttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagccaatgatattgtaaataagcttaaggaattcacttct |
100 |
Q |
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| T |
8438940 |
ttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagccaatgatattgtaaataagcttaaggaattcacttct |
8439038 |
T |
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| Q |
101 |
ttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatcactaataatagaaaaggaaaataatgatattgcattg |
200 |
Q |
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| T |
8439039 |
ttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatcactaataatagaaaaggaaaataatgatattgcattg |
8439138 |
T |
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| Q |
201 |
atcaaattaaataccttcctcatagaagacccggacctttg |
241 |
Q |
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| T |
8439139 |
atc-----aaatacctttctcatagaagacccggacctttg |
8439174 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
125 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
207 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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