View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10119_low_25 (Length: 251)
Name: NF10119_low_25
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 10263165 - 10263311
Alignment:
| Q |
91 |
gtttaaagattatacattaatatttaaaattgtattacaaagttattcaatcggatttcaccttggtgccacttgtannnnnnncttcatagaatacctc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10263165 |
gtttaaagattatacattaatatttaaaattgtattacaaagttattcaatcggatttcaccttggtgccacttaatatttttttttcatagaatacctc |
10263264 |
T |
|
| Q |
191 |
acaaacatctatgtgacaaaatctgattaaatgactaagtaaaatat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10263265 |
acaaacatctatgtgacaaaatctgattaaatgactaagtaaaatat |
10263311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 10271338 - 10271481
Alignment:
| Q |
91 |
gtttaaagattatacattaatatttaaaattgtattacaaagttattcaatcggatttcaccttggtgccac-ttgtannnnnnncttcatagaatacct |
189 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| || || ||||||| |||||| |
|
|
| T |
10271338 |
gtttaaaggttatgcattaatatttaaaactgtattacaaagttattcaatcagatttaaccttggtgccacattatatttt----ttcatagtatacct |
10271433 |
T |
|
| Q |
190 |
cacaaacatctatgtgacaaaatctgattaaatgactaagtaaaatat |
237 |
Q |
| |
|
|| ||| | ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10271434 |
cataaaaacctatgtgacaaaatctgattagatgactaagtaaaatat |
10271481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10241084 - 10241150
Alignment:
| Q |
1 |
ggatgttggaaagtgcttgaggcagaggataaaactaattgatgaatggatcaaaagtagaaaatag |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10241084 |
ggatgttggaaagtgcttgaggcagaggataaaactaattgaacaatggatcaaaagtagaaaatag |
10241150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 10241187 - 10241252
Alignment:
| Q |
91 |
gtttaaagattatacattaatatt-taaaattgtattacaaagttattcaatcggatttcaccttg |
155 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
10241187 |
gtttaaagattatgcattaatattataaaattgtattacaaagtttttcaatcagatttcaccttg |
10241252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 10241289 - 10241347
Alignment:
| Q |
179 |
atagaatacctcacaaacatctatgtgacaaaatctgattaaatgactaagtaaaatat |
237 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10241289 |
atagaatttctcacaaacatatatgtgacaaaatctgattagatgactaagtaaaatat |
10241347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University