View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10119_low_27 (Length: 244)

Name: NF10119_low_27
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10119_low_27
NF10119_low_27
[»] chr3 (13 HSPs)
chr3 (114-227)||(10584266-10584379)
chr3 (114-227)||(10360380-10360493)
chr3 (116-227)||(10130311-10130422)
chr3 (114-227)||(10035398-10035511)
chr3 (143-227)||(9980803-9980887)
chr3 (114-217)||(10264090-10264193)
chr3 (1-35)||(9980736-9980770)
chr3 (1-35)||(10035273-10035307)
chr3 (1-35)||(10130185-10130219)
chr3 (1-35)||(10263971-10264005)
chr3 (171-216)||(10430545-10430591)
chr3 (1-35)||(10430713-10430747)
chr3 (147-215)||(10504200-10504267)
[»] scaffold0083 (2 HSPs)
scaffold0083 (143-227)||(54250-54334)
scaffold0083 (1-35)||(54367-54401)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 10584266 - 10584379
Alignment:
Q  114 ccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584266 ccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 10584365  T
Q  214 ttggaaaaagctgt 227  Q
    ||||||||||||||    
T  10584366 ttggaaaaagctgt 10584379  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 10360493 - 10360380
Alignment:
Q  114 ccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360493 ccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 10360394  T
Q  214 ttggaaaaagctgt 227  Q
    ||||||||| ||||    
T  10360393 ttggaaaaacctgt 10360380  T

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Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 10130311 - 10130422
Alignment:
Q  116 agaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatcttt 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130311 agaatcaattaatgtagctcgggcagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatcttt 10130410  T
Q  216 ggaaaaagctgt 227  Q
    ||||||||||||    
T  10130411 ggaaaaagctgt 10130422  T

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Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 10035398 - 10035511
Alignment:
Q  114 ccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 213  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035398 ccagaatcaattaatgtagctcgggcagtatgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 10035497  T
Q  214 ttggaaaaagctgt 227  Q
    ||||||||||||||    
T  10035498 ttggaaaaagctgt 10035511  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 9980803 - 9980887
Alignment:
Q  143 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980803 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgt 9980887  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 10264090 - 10264193
Alignment:
Q  114 ccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatct 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||| ||||    
T  10264090 ccagaatcaattaatgtagctcgggtagtttgatatagaactacataagtcttgttggaaaactggtttcttattaatttttgggcttataaaaccatct 10264189  T
Q  214 ttgg 217  Q
    ||||    
T  10264190 ttgg 10264193  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9980736 - 9980770
Alignment:
Q  1 tttcatatcatctcatgggtcctctgctacgtatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9980736 tttcatatcatctcatgggtcctctgctacgtatg 9980770  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10035273 - 10035307
Alignment:
Q  1 tttcatatcatctcatgggtcctctgctacgtatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10035273 tttcatatcatctcatgggtcctctgctacgtatg 10035307  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10130185 - 10130219
Alignment:
Q  1 tttcatatcatctcatgggtcctctgctacgtatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10130185 tttcatatcatctcatgggtcctctgctacgtatg 10130219  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10263971 - 10264005
Alignment:
Q  1 tttcatatcatctcatgggtcctctgctacgtatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10263971 tttcatatcatctcatgggtcctctgctacgtatg 10264005  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 10430591 - 10430545
Alignment:
Q  171 gaaaactggtttcttatttat-ttttgggcttataaaactatctttg 216  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  10430591 gaaaactggtttcttattaatattttgggcttataaaactatctttg 10430545  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10430747 - 10430713
Alignment:
Q  1 tttcatatcatctcatgggtcctctgctacgtatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10430747 tttcatatcatctcatgggtcctctgctacgtatg 10430713  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 10504200 - 10504267
Alignment:
Q  147 tatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatcttt 215  Q
    |||||||||| |||||| ||   |||||||| |||| ||||| ||||||||| ||||||||||||||||    
T  10504200 tatataactatataagttatattggaaaactagttt-ttattaatttttgggattataaaactatcttt 10504267  T

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Target: scaffold0083 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 54334 - 54250
Alignment:
Q  143 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54334 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgt 54250  T

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Target: scaffold0083; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 54401 - 54367
Alignment:
Q  1 tttcatatcatctcatgggtcctctgctacgtatg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  54401 tttcatatcatctcatgggtcctctgctacgtatg 54367  T

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