View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_3 (Length: 760)
Name: NF10119_low_3
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 10 - 577
Target Start/End: Original strand, 49270311 - 49270878
Alignment:
| Q |
10 |
agcagcacagatcaagaaatcctgtcaagctaaatattttcacattattatgttaaacttgagaagataattatgttcatactcaaagagaactaacatc |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49270311 |
agcatcacagatcaagaaatcctgtcaagctaaatattttcacattattatgttaaacttgagaagataattatgttcatactcaaacagaactaacatc |
49270410 |
T |
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| Q |
110 |
ttaggccatgctatcttattatgattctgtaacagttttgaacatgtactgtttattgaaatataataatttctggaatgtctgattgcaggcaatcaag |
209 |
Q |
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| T |
49270411 |
ttaggccttgctatcttattatgattctgtaacagttttgaacatgtactgtttattgaaatataataatttctggaatgtctgattgcaggcaatcaag |
49270510 |
T |
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| Q |
210 |
gcacgggaaaggatatttcaaggaagacaggaagttttgcagtagaagaagatagatcaatttgaacaaacggagtaggtttctcaaagctgcagcttgt |
309 |
Q |
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| T |
49270511 |
gcacgggaaaggatatttcaaggaagacaggaagttttgcagtagaagaagatagatcaatttgaacaaatggagtaggtttctcaaagctgcagcttgt |
49270610 |
T |
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| Q |
310 |
ttagttaacatctctaaagcttatagcttgatgtgattagagagaaatatcaaatctcagatactataaagactaagggggaataagttttcacgcggag |
409 |
Q |
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| T |
49270611 |
ttagttaacatctctaaagcttatagcttgatgtgattagagagaaatatcaaatctcagatactataaagactaagggggaaaaagttttcacgcggag |
49270710 |
T |
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| Q |
410 |
aaatagttataaaatagatgatannnnnnnncttctcagttcaatttttggtaaggctctgcagtgttagtgtagcctttatcatatcatgatgatgtaa |
509 |
Q |
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| T |
49270711 |
aaatagttataaaatagatgatattttttttcttctcagttcaatttttggtaaggctctgcagtgttagtgtatcctttatcatatcatgatgatgtaa |
49270810 |
T |
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| Q |
510 |
aagaaattgaatgatttcatctcttccattaaattggaaatgaacatgagccaagtgagaatgaaaaa |
577 |
Q |
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| T |
49270811 |
aagaaattgaatgatttcatctcttcaattaaattggaaatgaacatgagccaagtgagaatgaaaaa |
49270878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 49257328 - 49257551
Alignment:
| Q |
8 |
ggagcagcacagatcaagaaatcctgtcaagctaaatattttcacattattatgttaaacttgagaagataattatgttcatactcaaagagaactaaca |
107 |
Q |
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| T |
49257328 |
ggagcatctcagatcaagaaattctgtcaagctaaatattttcaaggaaatatgttaaactagagaagatatcaatgttcatactca--gagaactagca |
49257425 |
T |
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| Q |
108 |
tcttaggccatgctatcttattatgattctgtaacagttttgaacatgtactgtttattgaaatataataatttctggaatgtc--tgattgcaggcaat |
205 |
Q |
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| T |
49257426 |
tcttaggccatgctatcttattaagattctgcaagagttttgaacatataccattcattaaaatatactcatttcttgagtgtctatgattgcaggcaat |
49257525 |
T |
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| Q |
206 |
caaggcacgggaaaggatatttcaag |
231 |
Q |
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| T |
49257526 |
taaggcacgggaaaggatatttcaag |
49257551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 448 - 577
Target Start/End: Original strand, 49272819 - 49272948
Alignment:
| Q |
448 |
gttcaatttttggtaaggctctgcagtgttagtgtagcctttatcatatcatgatgatgtaaaagaaattgaatgatttcatctcttcca-ttaaattgg |
546 |
Q |
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| T |
49272819 |
gttcaatttttgttaag-ctctgcagtgttagtgtaacttttatcatattatgatgatgtaaaagaaattgaatgagttcatcttttcaatttcaatcgg |
49272917 |
T |
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| Q |
547 |
aaatgaacatgagccaagtgagaatgaaaaa |
577 |
Q |
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| T |
49272918 |
agatgaatttgagccaagtgagaatgtaaaa |
49272948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 675 - 732
Target Start/End: Original strand, 49270976 - 49271033
Alignment:
| Q |
675 |
cctctactgtgattttctttgttggatgatgaatacaattataatctttattgagggg |
732 |
Q |
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| T |
49270976 |
cctctactgtgattttctttgttggatgatgaatacaattataatctttattgagggg |
49271033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 49272703 - 49272788
Alignment:
| Q |
302 |
cagcttgtttagttaacatctctaaagcttatagcttgatgtgattagagagaaatatcaaatctcagatactataaagactaagg |
387 |
Q |
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| T |
49272703 |
cagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatctcagatactataaggactaagg |
49272788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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