View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_4 (Length: 672)
Name: NF10119_low_4
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 267 - 519
Target Start/End: Complemental strand, 12857445 - 12857193
Alignment:
| Q |
267 |
gcgctctccaaagcaaaacctttactttatttggagtttataaattccacaccaatttccaattgctgggaacctgaaatttggtgttatccataagttg |
366 |
Q |
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| T |
12857445 |
gcgctctccaaagcaaaacctttactttatttgaaaattttaaattccacaccaatttccaattgttgggaacctgaaatttggtgttatttataagttg |
12857346 |
T |
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| Q |
367 |
ttccataatgtaatagtaagccaattttactgtatacacaccatcacggctatgcatccaagtaggttgatctctcatatgccctagaggaattttcggt |
466 |
Q |
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| T |
12857345 |
ttccataatgtaatattaagccaattttactgtatatgaaccatcacggctatgcatccaagtaggttgatctctcatatgccctagaggaattttcggt |
12857246 |
T |
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| Q |
467 |
tccgtctatgtcgcgtttctgagacatcgttgatagcacgcctaggtgccatt |
519 |
Q |
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| T |
12857245 |
tccgtctatgtcgcgtttctgagacatcgttgacagcacgcctaggtgccatt |
12857193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 12851438 - 12851296
Alignment:
| Q |
515 |
ccattggccactagtgtgaccataagatgagaagctcttaaatctttgtgacatatgatgggattggaaactacacacgcactactactgttacagagcc |
614 |
Q |
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| T |
12851438 |
ccattggccactagtgtgaccataagatgagaagctcttaaatctttgtgacatatgatgggattggaaactacacacgcactactactgttacagagcc |
12851339 |
T |
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| Q |
615 |
atggatccttccaaacgttgatgtctttaccgtcaccaatgtg |
657 |
Q |
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| T |
12851338 |
atggatccttccaaacgttgatgtctttaccgtcaccaatgtg |
12851296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 12857641 - 12857480
Alignment:
| Q |
17 |
catcaactatgttacgttgtcgagacaattttgacagcacgttgaaaaccgcttcattaaaatcttctgctctgtctaagtgtggttgcaaacaggtcat |
116 |
Q |
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| T |
12857641 |
catcaact-tgttatgttgcggagacagttttcacagcacgttgaaaaccgcttcatgaaaatcttccgctctgtcaaagtgtggttgcaaacaggtcat |
12857543 |
T |
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| Q |
117 |
caaccccacttcttgccatacctcttgtgctgccggacattctaatagagagtgccattcatt |
179 |
Q |
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| T |
12857542 |
caatcccacttcttgccatacctcttgtgctgcagggaattctaaaagagagtgccattcatt |
12857480 |
T |
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