View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10119_low_5 (Length: 479)
Name: NF10119_low_5
Description: NF10119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10119_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 34908767 - 34908305
Alignment:
| Q |
1 |
ataggccagacgaaagatgccgcaggaaactccagagtttgaacctaagacactgcgagaaacacataatgcagaggattcagaaggaagatgaggacgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34908767 |
ataggccagacgaaagatgccgcaggaaactccagagtttgaacctaagacactgcgaggaacacataatgcagaggattcagaaggaagatgaggacgt |
34908668 |
T |
|
| Q |
101 |
gctgagaatgaggggaatcaaccaccacgaagatctcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908667 |
gctgagaatgaggggaatcaaccaccacgaagatctcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgctttg |
34908568 |
T |
|
| Q |
201 |
caagagataatggagaatttgagtgataggttgggaaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattccac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908567 |
caagagataatggagaatttgagtgataggttggaaaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattccac |
34908468 |
T |
|
| Q |
301 |
aatcttctgagtgtgacttgagctttgatcagtactaaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatccttcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34908467 |
aatcttctgagtgtgacttgagctttgatcagtactaaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatctttcta |
34908368 |
T |
|
| Q |
401 |
tgcttttgtaatgtaataaagatcattggagaaaatgatcatgaaatgaaagcacatatggag |
463 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
34908367 |
tgcttttgtaatgtaataaagatcattggtgaaaatgatcatgaaatgaaagcacatatggag |
34908305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 34902550 - 34902085
Alignment:
| Q |
1 |
ataggccagacgaaagatgccgcaggaaactccagagtttgaacctaagacactgcgagaaacacataatgcagaggattcagaaggaagatgaggacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||||| |
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|
| T |
34902550 |
ataggccagacgaaagatgccgcatgcaactccagaggttgaacctaaatcactgcgagaaacacctaatgcagaggattcagaaggaggacgaggacgt |
34902451 |
T |
|
| Q |
101 |
gctgagaatgaggggaatcaaccaccacgaaga---tctcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgct |
197 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
34902450 |
gctgagaatgaggggaatcaactaccaagaagaagatctcaaggagaagtgttgtaatcagcttagtgaagttaacaataaggaatgtaggtgtaatgct |
34902351 |
T |
|
| Q |
198 |
ttgcaagagataatggagaatttgagtgataggttgggaaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
34902350 |
ttgcaagagataatggagaatttgagtgataggttgggaaagagggaaatgtatgagatggagagggaggtgaggaatttgcctaagaggtgtaatattc |
34902251 |
T |
|
| Q |
298 |
cacaatcttctgagtgtgacttgagctttgatcagtactaaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatcctt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
34902250 |
cacaatcttctgagtgtgacttgagctttgatcagtactaaaaaataagtaagggataatgtgatagcttaattattataatattaattaagctatcttt |
34902151 |
T |
|
| Q |
398 |
ctatgcttttgtaatgtaataaagatcattggagaaaatgatcatgaaatgaaagcacatatggag |
463 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34902150 |
ctatgattttgtaatgtaataaagatcattggtgaaaatgatcatgaaatgaaagcacatatggag |
34902085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 34895034 - 34894576
Alignment:
| Q |
1 |
ataggccagacgaaagatgccgcaggaaactccagagtttgaacctaagacactgcgagaaacacataatgcagaggattcagaaggaagatgaggacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || | |||||| |
|
|
| T |
34895034 |
ataggccagacgaaagatgccgcatgcaactccagaggttgaacctaaatcactgcgagaaacacctaatgcagaggattcagaaggaggacggggacgt |
34894935 |
T |
|
| Q |
101 |
gctgagaatgaggggaatcaaccaccacgaaga---tctcaaggagaagtgttgtgatcagcttaatgaagttaacaataaggaatgtaggtgcaatgct |
197 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
34894934 |
gctgagaatgaggggaatcaactaccaagaagaagatctcaaggagaagtgttgtaatcagcttagtgaagttaacaataaggaatgtaggtgtaatgct |
34894835 |
T |
|
| Q |
198 |
ttgcaagagataatggagaatttgagtgataggttgggaaagagggaaatgtatgagatggagagggagataaggaatttgcctaagaggtgtaatattc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
34894834 |
ttgcaagagataatggagaatttgagtgataggttgggaaagagggaaatgtatgagatggagagggaggtgaggaatttgcctaagaggtgtaatattc |
34894735 |
T |
|
| Q |
298 |
cacaatcttctgagtgtgacttgagctttgatcagtactaaaatataagtaaggggtaatgtgatagcttaattattataatattaattaagctatcctt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||| |||||||||| | |
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|
| T |
34894734 |
cacaatcttctgagtgtgacttgagctttgatcagtactaaaaaataagtaagggataatgtgatagcttaattattgga---ttagttaagctatctct |
34894638 |
T |
|
| Q |
398 |
ctatgcttttgtaatgtaataaagatcattggagaaaatgatcatgaaatgaaagcacatat |
459 |
Q |
| |
|
||||| || ||||||| ||||||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
34894637 |
ctatgtttatgtaatgaaataaagatcattagtgaaaatggtcatgaaatgaaagcacatat |
34894576 |
T |
|
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